Suppose you have an equation like this:
\(x^2 = a, \;\;\;\; a \in \mathbb{R}_{\geq 0}\)
Your task is to compute the solution \(x \in \mathbb{R}_{\geq 0}\).
How do you solve this algorithmically?
Input and output
Write a program that takes two parameters \(a, n \in \mathbb{N}_{\geq 1}\):
- \(a\): The number you should take the square root of. \(a\) is not bigger than 65535. To make this a little bit simpler, you can also assume that \(a\) is an integer.
- \(n\): Number of iterations you may use
Your program should output exactly one positive floating point number. The decimal separator is a point. At the end of the number should be a newline character \n
.
Reference code
// Thanks to http://stackoverflow.com/a/15363123/562769
#include <stdio.h>
#include <gmp.h>
int main(int argc, char *argv[]) {
mpf_t res, a;
mpf_set_default_prec(1000000); // Increase this number.
mpf_init(res);
mpf_init(a);
mpf_set_str(a, "2", 10);
mpf_sqrt (res, a);
gmp_printf("%.1000Ff\n\n", res); // Increase this number.
return 0;
}
You need GMP (libgmp-dev
) to compile this.
Compile it like this:
gcc sqrt-reference.c -lgmp -lm -O0 -g3 -o reference.out
This is the script I use to get the number of correct digits:
#!/usr/bin/env python
# -*- coding: utf-8 -*-
def getScore(program, a, n):
import os
os.system("./reference.out " + str(a) + " > reference.txt")
os.system("./" + program + " " + str(a) + " " + str(n) + " > result.txt")
f = open("reference.txt", "r")
reference = f.read()
f.close()
f = open("result.txt", "r")
result = f.read()
f.close()
points = 0
areEqual = True
while reference[points] != "\n" and result[points] != "\n":
if reference[points] == result[points]:
points += 1
else:
break
if points >= 2:
points -= 1 # decimal point
return points
if __name__ == "__main__":
from argparse import ArgumentParser
parser = ArgumentParser()
# Add more options if you like
parser.add_argument(
"-p",
"--program",
dest="program",
help="your program",
metavar="FILE",
required=True,
)
parser.add_argument(
"-a", metavar="A", type=int, required=True, help="calculate squre root of a"
)
parser.add_argument(
"-n", metavar="N", type=int, required=True, help="maximum n iterations"
)
args = parser.parse_args()
print(
"Points for a=%i and n=%i: %i"
% (args.a, args.n, getScore(args.program, args.a, args.n))
)
Newton's method
How should be choose the initial value? I thought \(\frac{a}{2}\) could be ok. In a good implementation you'll probably do this with a lookup table.
With long double:
#include <iostream>
#include <cmath>
using namespace std;
long double newton(int a, int n) {
long double x = ((long double)a)/2;
for (int i=0; i<n; i++) {
x = x - (x*x - a)/(2*x);
}
return x;
}
int main(int argc, char *argv[]) {
if (argc != 3) {
cout << "Please enter exactly two arguments." << endl;
return 1;
}
int a = atoi(argv[1]);
int n = atoi(argv[2]);
printf("%.80Lf\n", newton(a, n));
return 0;
}
I failed to convert this to a version that uses GMP :-/
But it converges quite fast:
Exponential identity
According to Wikipedia (Source: Methods of computing square roots) many calculators use the following identity:
\(\displaystyle \sqrt{a} = e^{\frac{1}{2}\ln a}\)
But to calculate this, you need to be able to calculate \(e^x\) for \(x \in \mathbb{R}_{\geq 0}\) and \(\ln(a)\) for \(a \in \mathbb{R}_{\geq 0}\).
I've used the definition of \(e^x\) to calculate \(e^x\): \(\displaystyle e^x := \sum_{i = 0}^\infty \frac{x^i}{i!}\)
and:
\(\displaystyle \ln(1+x) =- \sum_{k=0}^\infty \frac{(-x)^{k+1}}{k+1}\)
So I gave it a try:
#include <iostream>
#include <cmath>
using namespace std;
long double ln(int S, int n) {
long double tmp = S - 1;
long double result = tmp;
long double sign = 1.0;
for (int i=2; i<n/2; i++) {
tmp *= (S-1);
sign *= -1;
result += sign*tmp/i;
}
return result;
}
long double e(long double x, int n) {
long double numerator = 1;
long double denominator = 1;
long double result = 1;
for (int i=1; i<n/2; i++) {
numerator *= x;
denominator *= i;
result += numerator/denominator;
}
return result;
}
long double sqrt(int a, int n) {
return e(ln(a, n)*0.5, n);
}
int main(int argc, char *argv[]) {
if (argc != 3) {
cout << "Please enter exactly two arguments." << endl;
return 1;
}
int a = atoi(argv[1]);
int n = atoi(argv[2]);
printf("%.80Lf\n", sqrt(a, n));
return 0;
}
This converges VERY slow: For \(a = 2\)
- $n=1$: 1 digit correct
- $n=10$: 1 digit correct
- $n=100$: 2 digits correct
- $n=1000$: 4 digit correct
- $n=10,000$: 5 digit correct
- $n=100,000$: 5 digit correct
- $n=1,000,000$: 6 digit correct
Ok, lets take a better Taylor series for calculating \(e^x\): \(\displaystyle e^x = \sum_{k=0}^\infty \frac{x^{-1+2 k} (2 \cdot k+x)}{(2\cdot k)!}\)
This didn't change anything! I'm very surprised ... as I've calculated \(\pi\) for another article, changing the series to something similar improved the speed of convergence drastically.
See also
- StackOverflow: How does the computer calculate Square roots?
- Intel® 64 and IA-32 Architectures Software Developer’s Manual: FSQRT, SQRTPS, SQRTSS
- Source code of this article
Feel free to add a program that calculates square roots. When they are interesting, I'll probably add them to this article.


--- layout: page title: Lean Prover Zulip Chat Archive permalink: archive/113488general/21801cacheoleannolongerworking.html ---
Anybody else having this problem?
HEAD is now at d7283d7f feat(string): `split_on` a `char` (#1145) Trying to fetch cached olean .git/hooks/post-checkout: line 14: /Users/chrishughes/.mathlib/bin/cache-olean: Permission denied
Are you sure all the scripts in .mathlib/bin
have execution permission? Try chmod +x ~/.mathlib/bin/cache-olean
Fixed thanks.
:+1:
The setup should really take care of the for you though
I had the same problem recently, actually. I wonder what happened.
{% endraw %}


Get Ray Ban Logo On Glasses PNG. If you order ray ban glasses they should always come with a branded leather case and cleaning cloth. See more ideas about ray ban sunglasses, sunglasses size 50.
Enjoy a wide range and free shipping on all orders. Discover the collection online and order today with free shipping. 1200 x 378 jpeg 73 кб.
I bought these glasses and i really liked the frame.
The top countries of suppliers are pakistan, china, from. If this isn't included with the glasses in its own clear plastic envelope, your glasses. Material that is textured (and feels like) real leather. So i decided to remove it to give them a little.


Status
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Operating environment
Interfaces
The admin console is bound to *.*.*.*:----
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|---|---|---|
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The page you are looking for does not exists. Please contact the admin at<EMAIL_ADDRESS>for more info.


Books I like
Book Name
Author
Publication Year
Link to Amazon
Lord of the Flies
William Golding
1954
A Clockwork Orange
Anthony Burgess
1962
Anayurt Oteli
Yusuf Atılgan
1973


Sean Garner
ResuméI have always been fascinated by how things work. I also have a deep appreciation and love for art and creativity. I can happily say that am fortunate enough to have found an outlet that really lets me explore both. Before I truly discovered programming, you could find me traveling the country performing in a Broadway national tour. On our 10 hour bus trip days between cities, most of my castmates would watch their favorite T.V. shows or catch up on sleep, meanwhile you could find me on my laptop experimenting with DAW software synths and reading up on sound wave manipulation.
This is one example but it was a consistent pattern for me. I found ways to stay creative and also keep my mind engaged with self-assigned problems to solve or new things to learn. However, there did seem to be an apparent divide between those two passions until I was gifted my first book on programming. It didn't take long for me to realize this was something I wanted to invest in.
Fast forward to the present and I am now making responsive web apps utilizing skills such as Ruby/Rails, JavaScript, React, SQL, HTML and CSS. It has been an incredibly rewarding experience so far. Even debugging. Truly, It feels so good to add a new feature, have everything break, and then fix it back up again to something better than it was before. I find that process invaluable. I will always make it my mission to continue to learn and grow as a developer. If you want to talk code (or anything really), feel free to contact me.


core¶
Generalized procedures backing map_ops.operations()
.
If you need greater control over specific behavior as it pertains to any of the
basic operations
functions, use these instead.
Examples¶
Here are some case studies for how you could write a custom put
function
that concatenates lists. The first one is only concerned with lists occuring at
the “top” level of a dictionary (ie, excluding lists WITHIN lists):
from map_ops.core import put_
d1 = {
"foo": {
"bar": [1, 2]
}
}
d2 = {
"foo": {
"bar": [3, 4]
}
}
def l_put(d1, d2):
strategy = lambda x, y: x + y
return put_(d1, d2, list_strategy=strategy)
l_put(d1, d2)
{
"foo": {
"bar": [1, 2, 3, 4]
}
}
We can up the game a little and assume we want to also concatenate lists within complex objects which are, themselves, in a list:
from map_ops.core import put_
from functools import reduce
d1 = {
"foo": [
{"bar": [1, 2]},
{"bar": [3, 4]}
]
}
d2 = {
"foo": [
{"baz": 1, "bar": [5, 6]}
]
}
def strategy(l1, l2):
if not isinstance(l1[0], dict):
# what to do with a list of primitives
return l1 + l2
# what to do with a list of dicts
return reduce(
lambda x, y: put_(x, y, list_strategy=strategy),
l1 + l2
)
put_(d1, d2, list_strategy=strategy)
{
"foo": [
{
"baz": 1,
"bar": [1, 2, 3, 4, 5, 6]
}
]
}
-
map_ops.core.
cut_
(d1, d2, on_missing=None, on_match=None, on_mismatch=None, list_strategy=None)¶ Generalized function for removing d1 from d2
- Parameters
d1 (
dict
) – A Python dictd1 – Python dict
on_missing (
Optional
[Callable
[[Any
],Any
]]) – A Callable to tell walk how to handle a key present in d1 but not d2on_match (
Optional
[Callable
[[Any
,Any
],Any
]]) – A Callable to tell walk how to handle same keys with differing valueslist_strategy (
Optional
[Callable
[[Any
,Any
],Any
]]) – A Callable to tell walk how to handle any lists it encounters
- Return type
dict
- Returns
A Python dict
-
map_ops.core.
diff_
(d1, d2, on_missing=None, on_match=None, on_mismatch=None, list_strategy=None)¶ Generalized function for differencing two dicts
- Parameters
d1 (
dict
) – A Python dictd1 – Python dict
on_missing (
Optional
[Callable
[[Any
],Any
]]) – A Callable to tell walk how to handle a key present in d1 but not d2on_match (
Optional
[Callable
[[Any
,Any
],Any
]]) – A Callable to tell walk how to handle same keys with differing valueslist_strategy (
Optional
[Callable
[[Any
,Any
],Any
]]) – A Callable to tell walk how to handle any lists it encounters
- Return type
dict
- Returns
A Python dict
-
map_ops.core.
put_
(d1, d2, on_missing=None, on_match=None, on_mismatch=None, list_strategy=None)¶ Generalized function for inserting d1 into d2
- Parameters
d1 (
dict
) – A Python dictd1 – Python dict
on_missing (
Optional
[Callable
[[Any
],Any
]]) – A Callable to tell walk how to handle a key present in d1 but not d2on_match (
Optional
[Callable
[[Any
,Any
],Any
]]) – A Callable to tell walk how to handle same keys with differing valueslist_strategy (
Optional
[Callable
[[Any
,Any
],Any
]]) – A Callable to tell walk how to handle any lists it encounters
- Return type
dict
- Returns
A Python dict


This section explains how to obtain the Dita4Publishers plug-in and create an ePub
eBook from content written in DITA XML, with the Open Toolkit.
The prerequisite for this procedure is that you have the Open Toolkit installed and
running. No other software is required.
If you have content in DITA XML you can create an ePub eBook just like you would
generate a PDF, XHTML or other output. An ePub eBook is a zip file which is renamed
with the .epub extension. This file contains XHTML content
files and several other files. The whole package must conform with the ePub
standard. The plug-in takes care of all of this for you.
-
Go to Dita4Publishers website where you can find all the
links and information you need about the plug-in.
The ePub plug-in can be downloaded from the SourceForge project page.
-
Unzip the downloaded zip file and read the readme file that explains where you
should put the plug-in.
You should put the contents of the zip in the plug-ins folder of the
DITA OT installation.
-
Run the tests as indicated in the readme file. The code is for processing from
the Java command line. If you don't know what this is look it up in the DITA
Open Toolkit User Guide. Alternatively, you can use Ant to generate your output
just like the other OT test examples.
You should now have the test output in the default
out folder which is a child of your DITA OT
installation. The tests should only take a few seconds to generate. If you want
you can make an ePub from some of the other content provided with the OT by
pointing the input to a ditamap of choice, for example the Language Reference
Guide.
Note: Generating the Language Reference Guide takes several
minutes.
You are now ready to create an ePub eBook from any content you may have in DITA XML,
including content you have in foreign languages. Your ePub eBooks can be viewed on an
eBook reader device or on your computer with Adobe Digital Editions for
example.


Dashboard
USER NAME
Logout
Voiz Fonica
Home
My Account
Edit profile
Invoice bills
New Connection
Help & support
Logout
Data consumed
900MB / 1GB
90%
Monthly Usage
Data Consumed


Ellen Yi-Luen Do & Mark D. Gross
"Diagrams are essential representations for thinking, problem solving, and communication in the
design disciplines, in particular those concerned with making physical form: mechanical and civil
engineering, graphic design, and architecture and physical planning."
"In architecture, drawings are the primary form of representation; they carry a design from conception to construction. Except
for physical models (which can be considered a kind of three-dimensional drawing) all external
design representations in architecture are drawings."


Bought this trimmer
Makita 3700 on auction for 15 USD delivered in junk state, the on/off switch was broken. So I opened the baby, dismantled it, gave it a good vacuuming/brushing cleaning and simply changed the switch for one I bought years ago in Hongkong because it lkookd beefy and ... cool. Perfect fit. A little sweat when remounting it, but these things are made to be serviced (thank you Japanese engineers), so using the manual, gentleness and good sense, everything was back in order.
PS: also some light hammer strokes helped for the last centimeter when reassembling the body (^_^)
Reference:
Parts breakdown document from Makita.
The new switch: 15 HKD/ 2 USD
The trimmer opened
Voila, work finished with the sick puppy at the front and the new one at the top
So nice breakdown... The culprit was #7


A subgraph attribute data file provides the values for a single subgraph attribute.
Subgraph attribute data files typically obey the following filename format:
si_
n
_attr_attrname
.data
where
n
is the ID of the encompassing
container
attrname
is name of the subgraph
attribute
For example, a file storing values for subgraph attribute
sample in container 2
would be called si_2_attr_sample.data
.
The names for the subgraph attribute data files are suggested conventions, which Proximity uses for naming exported data files. Proximity uses whatever filenames you provide in the corresponding subgraph attribute specification file when importing data.
subg-id value [value]
where
subg-id
is the subgraph ID
value
is the value of this
attribute for the specified subgraph; string values must be quoted
Subgraph IDs may be used more than once in the file when the corresponding entity has multiple values for the specified attribute. Additional tab-separated value columns are used when providing data for multi-dimensional subgraph attributes.
The following example provides the values for a
sample-role subgraph attribute. The first
line specifies that subgraph 0 has a value of
"test"
for this attribute.
0 "test" 1 "train" 2 "train" 3 "test"


This is my chart page
Identifying the Parameters
Revenue Generated from Sponsored Ads
Cost per View (CPV)
-
Estimate: $0.15
Cost per Click (CPC)
-
Estimate: $0.30
Estimating Number of Users
-
Bottom-up Approach:
-
Starting from my personal use-case
-
With ~1 hour of idle use on a given day, I see an average of 5 ads
-
Estimating that 2 hours of idle use is the average frequency of active daily users
-
Assume a 10 ads per user per day (A/UD)
Determining Twitter's 2014 Annual Revenue
Data Source for Reported Annual Revenue:
Market Watch
http://www.forbes.com/sites/investopedia/2013/10/10/twitters-got-a-revenue-conundrum/


sick
HJ 4
I am sorry Sick Yoda. services.2014.shallweplayaga.me/comeandgetme.enc_99509db93ee7ef2ee463df934c2c027a services.2014.shallweplayaga.me/pub.pem_c5ea59f35d1b7ebf6e9f140144c2a2b8
bcrypted answer: $2a$10$Jd9GKS0oNLbL1N4Lxsv2wesuH55nnUdgaY2C3o8CTRF2sfXL9pdKq
solving teams:
solved by 3 teams


Gunshot
Shot to the head by 30-30 rifle Malayan terrorist hit by Belgian rifle Powder tattooing at intermediate range Near contact shotgun wound to head 12 Gauge No. 6 suicide Suicide in bed Traumatic capitation by high explosive shell Shotgun to chest at 5 yards


{% extends "layout.html" %} {% block title %} History {% endblock %} {% block main %}
Clearing your history will permanently delete all of your transaction records and cannot be recovered.


{{group.label}}
{{section.CourseTitle}}
Section: {{section.SectionNumber}}
Instructor: {{section.Instructor}}
Time: {{section.MeetingTime}}
Room: {{section.BldgRoom}}
Type: {{section.CourseInstructionType}}
Start/End: {{section.ClassStartDate}} - {{section.ClassEndDate}}


{% extends "generic.html" %} {% block header %} {{ entry.title }} {% endblock %} {% load static %} {% if error_message %}
{{ error_message }}
{% endif %} {% block content %}This entry describes setting up a simple job with Airflow from the pip package manager using this tutorial.
Install airflow through pip.
pip3 install apache-airflow
In an open terminal run the following:
airflow webserver -p 8080
airflow scheduler
In another terminal run the following:
airflow run tutorial sleep 2020-08-26
Verify the first terminal verify job updates.
[2020-08-26 12:47:10,263] {scheduler_job.py:961} INFO - 2 tasks up for execution:
[2020-08-26 12:47:10,265] {scheduler_job.py:994} INFO - Figuring out tasks to run in Pool(name=default_pool) with 128 open slots and 2 task instances ready to be queued
[2020-08-26 12:47:10,265] {scheduler_job.py:1023} INFO - DAG tutorial has 0/16 running and queued tasks
[2020-08-26 12:47:10,265] {scheduler_job.py:1023} INFO - DAG tutorial has 1/16 running and queued tasks
[2020-08-26 12:47:10,267] {scheduler_job.py:1084} INFO - Setting the following tasks to queued state:
Verify using the browser by going to the localhost server, then selecting the Browse tab, and clicking Jobs.
{% endblock %}


Apache Flink 1.14.5 Release Announcement
June 22, 2022 - Xingbo HuangThe Apache Flink Community is pleased to announce another bug fix release for Flink 1.14.
This release includes 67 bugs, vulnerability fixes and minor improvements for Flink 1.14. Below you will find a list of all bugfixes and improvements (excluding improvements to the build infrastructure and build stability). For a complete list of all changes see: JIRA.
We highly recommend all users to upgrade to Flink 1.14.5.
Release Artifacts #
Maven Dependencies #
<dependency>
<groupId>org.apache.flink</groupId>
<artifactId>flink-java</artifactId>
<version>1.14.5</version>
</dependency>
<dependency>
<groupId>org.apache.flink</groupId>
<artifactId>flink-streaming-java_2.11</artifactId>
<version>1.14.5</version>
</dependency>
<dependency>
<groupId>org.apache.flink</groupId>
<artifactId>flink-clients_2.11</artifactId>
<version>1.14.5</version>
</dependency>
Binaries #
You can find the binaries on the updated Downloads page.
Docker Images #
- library/flink (official images)
- apache/flink (ASF repository)
PyPi #
Release Notes #
Sub-task
- [FLINK-25800] - Update wrong links in the datastream/execution_mode.md page.
Bug
- [FLINK-22984] - UnsupportedOperationException when using Python UDF to generate watermark
- [FLINK-24491] - ExecutionGraphInfo may not be archived when the dispatcher terminates
- [FLINK-25227] - Comparing the equality of the same (boxed) numeric values returns false
- [FLINK-25440] - Apache Pulsar Connector Document description error about 'Starting Position'.
- [FLINK-25904] - NullArgumentException when accessing checkpoint stats on standby JobManager
- [FLINK-26016] - FileSystemLookupFunction does not produce correct results when hive table uses columnar storage
- [FLINK-26018] - Unnecessary late events when using the new KafkaSource
- [FLINK-26049] - The tolerable-failed-checkpoints logic is invalid when checkpoint trigger failed
- [FLINK-26285] - ZooKeeperStateHandleStore does not handle not existing nodes properly in getAllAndLock
- [FLINK-26334] - When timestamp - offset + windowSize < 0, elements cannot be assigned to the correct window
- [FLINK-26381] - Wrong document order of Chinese version
- [FLINK-26395] - The description of RAND_INTEGER is wrong in SQL function documents
- [FLINK-26504] - Fix the incorrect type error in unbounded Python UDAF
- [FLINK-26536] - PyFlink RemoteKeyedStateBackend#merge_namespaces bug
- [FLINK-26543] - Fix the issue that exceptions generated in startup are missed in Python loopback mode
- [FLINK-26550] - Correct the information of checkpoint failure
- [FLINK-26607] - There are multiple MAX_LONG_VALUE value errors in pyflink code
- [FLINK-26629] - Error in code comment for SubtaskStateMapper.RANGE
- [FLINK-26645] - Pulsar Source subscribe to a single topic partition will consume all partitions from that topic
- [FLINK-26708] - TimestampsAndWatermarksOperator should not propagate WatermarkStatus
- [FLINK-26738] - Default value of StateDescriptor is valid when enable state ttl config
- [FLINK-26775] - PyFlink WindowOperator#process_element register wrong cleanup timer
- [FLINK-26846] - Gauge metrics doesn't work in PyFlink
- [FLINK-26855] - ImportError: cannot import name 'environmentfilter' from 'jinja2'
- [FLINK-26920] - Job executes failed with "The configured managed memory fraction for Python worker process must be within (0, 1], was: %s."
- [FLINK-27108] - State cache clean up doesn't work as expected
- [FLINK-27174] - Non-null check for bootstrapServers field is incorrect in KafkaSink
- [FLINK-27223] - State access doesn't work as expected when cache size is set to 0
- [FLINK-27255] - Flink-avro does not support serialization and deserialization of avro schema longer than 65535 characters
- [FLINK-27315] - Fix the demo of MemoryStateBackendMigration
- [FLINK-27409] - Cleanup stale slot allocation record when the resource requirement of a job is empty
- [FLINK-27442] - Module flink-sql-avro-confluent-registry does not configure Confluent repo
- [FLINK-27545] - Update examples in PyFlink shell
- [FLINK-27676] - Output records from on_timer are behind the triggering watermark in PyFlink
- [FLINK-27733] - Rework on_timer output behind watermark bug fix
- [FLINK-27751] - Dependency resolution from repository.jboss.org fails on CI
- [FLINK-27760] - NPE is thrown when executing PyFlink jobs in batch mode
New Feature
- [FLINK-26382] - Add Chinese documents for flink-training exercises
Improvement
- [FLINK-5151] - Add discussion about object mutations to heap-based state backend docs.
- [FLINK-23843] - Exceptions during "SplitEnumeratorContext.runInCoordinatorThread()" should cause Global Failure instead of Process Kill
- [FLINK-24274] - Wrong parameter order in documentation of State Processor API
- [FLINK-24384] - Count checkpoints failed in trigger phase into numberOfFailedCheckpoints
- [FLINK-26130] - Document why and when user would like to increase network buffer size
- [FLINK-26575] - Improve the info message when restoring keyed state backend
- [FLINK-26650] - Avoid to print stack trace for checkpoint trigger failure if not all tasks are started
- [FLINK-26788] - AbstractDeserializationSchema should add cause when thow a FlinkRuntimeException
- [FLINK-27088] - The example of using StringDeserializer for deserializing Kafka message value as string has an error
- [FLINK-27480] - KafkaSources sharing the groupId might lead to InstanceAlreadyExistException warning
- [FLINK-27776] - Throws exception when udaf used in sliding window does not implement merge method in PyFlink
Technical Debt
- [FLINK-25694] - Upgrade Presto to resolve GSON/Alluxio Vulnerability
- [FLINK-26352] - Missing license header in WebUI source files
- [FLINK-26961] - Update multiple Jackson dependencies to v2.13.2 and v<IP_ADDRESS>


v0.4 documentation
Download the start_project.py script
$ curl http://gist.github.com/gists/444408/download | tar -zxv
$ mv gist444408-597f127451c5cd81e599753224b4e9fb133bd3eb project_template
$ cd project_template
Download the example Project Template
$ curl -L https://github.com/callowayproject/project_tmpl/tarball/master | tar -zvx
$ mv callowayproject-project_tmpl-0dcbf69 project_tmpl
Execute:
$ python start_project.py
and answer the questions.
$ python start_project.py
Project name: sampleproject
Administrator e-mail address<EMAIL_ADDRESS>Destination directory (currently at /home/demo/project_template):
Project template directory [/home/demo/project_tmpl]: ./project_tmpl
Virtual environment name (e.g. sampleproject):
Copying /home/demo/quickstart/project_tmpl/__init__.py to /home/demo/quickstart/sampleproject/__init__.py
Copying /home/demo/quickstart/project_tmpl/manage.py to /home/demo/quickstart/sampleproject/manage.py
Copying /home/demo/quickstart/project_tmpl/menu.py to /home/demo/quickstart/sampleproject/menu.py
Copying /home/demo/quickstart/project_tmpl/settings.py to /home/demo/quickstart/sampleproject/settings.py
Copying /home/demo/quickstart/project_tmpl/urls.py to /home/demo/quickstart/sampleproject/urls.py
Copying /home/demo/quickstart/project_tmpl/apps/media_storage.py to /home/demo/quickstart/sampleproject/apps/media_storage.py
Copying /home/demo/quickstart/project_tmpl/apps/yourappshere.txt to /home/demo/quickstart/sampleproject/apps/yourappshere.txt
Copying /home/demo/quickstart/project_tmpl/bin/ext-status.sh to /home/demo/quickstart/sampleproject/bin/ext-status.sh
Copying /home/demo/quickstart/project_tmpl/bin/install.sh to /home/demo/quickstart/sampleproject/bin/install.sh
Copying /home/demo/quickstart/project_tmpl/bin/pull-ext.sh to /home/demo/quickstart/sampleproject/bin/pull-ext.sh
Copying /home/demo/quickstart/project_tmpl/bin/push-ext.sh to /home/demo/quickstart/sampleproject/bin/push-ext.sh
Copying /home/demo/quickstart/project_tmpl/bin/upgrade.sh to /home/demo/quickstart/sampleproject/bin/upgrade.sh
Copying /home/demo/quickstart/project_tmpl/conf/$$$$PROJECT_NAME$$$$.wsgi to /home/demo/quickstart/sampleproject/conf/sampleproject.wsgi
Copying /home/demo/quickstart/project_tmpl/conf/apache2-$$$$PROJECT_NAME$$$$ to /home/demo/quickstart/sampleproject/conf/apache2-sampleproject
Copying /home/demo/quickstart/project_tmpl/conf/nginx-$$$$PROJECT_NAME$$$$ to /home/demo/quickstart/sampleproject/conf/nginx-sampleproject
Copying /home/demo/quickstart/project_tmpl/lib/yourlibshere.txt to /home/demo/quickstart/sampleproject/lib/yourlibshere.txt
Copying /home/demo/quickstart/project_tmpl/setup/_bootstrap.sh to /home/demo/quickstart/sampleproject/setup/_bootstrap.sh
Copying /home/demo/quickstart/project_tmpl/setup/calloway_reqs.txt to /home/demo/quickstart/sampleproject/setup/calloway_reqs.txt
Copying /home/demo/quickstart/project_tmpl/setup/requirements.txt to /home/demo/quickstart/sampleproject/setup/requirements.txt
Copying /home/demo/quickstart/project_tmpl/templates/404.html to /home/demo/quickstart/sampleproject/templates/404.html
Copying /home/demo/quickstart/project_tmpl/templates/500.html to /home/demo/quickstart/sampleproject/templates/500.html
Copying /home/demo/quickstart/project_tmpl/templates/base.html to /home/demo/quickstart/sampleproject/templates/base.html
Copying /home/demo/quickstart/project_tmpl/templates/site_base.html to /home/demo/quickstart/sampleproject/templates/site_base.html
Copying /home/demo/quickstart/project_tmpl/templates/admin/base_site.html to /home/demo/quickstart/sampleproject/templates/admin/base_site.html
Copying /home/demo/quickstart/project_tmpl/templates/admin/change_form.html to /home/demo/quickstart/sampleproject/templates/admin/change_form.html
Copying /home/demo/quickstart/project_tmpl/templates/admin/positions/selector.html to /home/demo/quickstart/sampleproject/templates/admin/positions/selector.html
Making the virtual environment (sampleproject)...
New python executable in sampleproject/bin/python
Installing distribute..................................................................................................................................................................................done.
virtualenvwrapper.user_scripts Creating /home/demo/.virtualenvs/sampleproject/bin/predeactivate
virtualenvwrapper.user_scripts Creating /home/demo/.virtualenvs/sampleproject/bin/postdeactivate
virtualenvwrapper.user_scripts Creating /home/demo/.virtualenvs/sampleproject/bin/preactivate
virtualenvwrapper.user_scripts Creating /home/demo/.virtualenvs/sampleproject/bin/postactivate
Searching for pip
Best match: pip 0.6.3
Processing pip-0.6.3-py2.6.egg
pip 0.6.3 is already the active version in easy-install.pth
Installing pip script to /home/demo/.virtualenvs/sampleproject/bin
Using /home/demo/.virtualenvs/sampleproject/lib/python2.6/site-packages/pip-0.6.3-py2.6.egg
Processing dependencies for pip
Finished processing dependencies for pip
Installing requirements...
Downloading/unpacking calloway
Downloading calloway-0.1.10.tar.gz (10.4Mb): 10.4Mb downloaded
Running setup.py egg_info for package calloway
no previously-included directories found matching 'project'
no previously-included directories found matching 'calloway_test'
Installing collected packages: calloway
Running setup.py install for calloway
no previously-included directories found matching 'project'
no previously-included directories found matching 'calloway_test'
changing mode of build/scripts-2.6/generate_reqs.py from 644 to 755
changing mode of /Users/coordt/.virtualenvs/sampleproject/bin/generate_reqs.py to 755
Successfully installed calloway
Downloading/unpacking Django
Downloading Django-1.3.tar.gz (6.2Mb): 6.2Mb downloaded
Running setup.py egg_info for package Django
warning: no files found matching '*' under directory 'examples'
Installing collected packages: Django
Running setup.py install for Django
changing mode of build/scripts-2.6/django-admin.py from 644 to 755
warning: no files found matching '*' under directory 'examples'
changing mode of /Users/coordt/.virtualenvs/sampleproject/bin/django-admin.py to 755
Successfully installed Django
Cleaning up...
The script copies the template project to the specified folder, replacing the placeholder elements in transit. Then it creates a virtualenv, installs pip and distribute, and finally executes an initial pip install -r setup/requirements.txt that should at least install Django and Calloway.
Switch to the virtual environment we specified in the script:
workon sampleproject
Customize the settings.py file, specifically changing the application bundles included in the INSTALLED_APPS setting. The example template uses:
INSTALLED_APPS = APPS_DJANGO13_BASE + \
APPS_ADMIN + \
APPS_STAFF + \
APPS_REVERSION + \
APPS_STORIES + \
APPS_CALLOWAY_DEFAULT + \
APPS_MPTT + \
APPS_CATEGORIES + \
APPS_COMMENT_UTILS + \
APPS_FRONTEND_ADMIN + \
APPS_MEDIA + \
APPS_UTILS + \
APPS_REGISTRATION + \
APPS_TINYMCE
Remove any application bundles that you don’t want or need, and add any others by adding them in an additional tuple like:
INSTALLED_APPS = APPS_CORE + \
APPS_ADMIN + \
APPS_STAFF + \
...
APPS_TINYMCE + (
"cheese_shop",
"dead_parrot",
"holy_grail",
)
When Calloway is installed, it installs a stand-alone script to dynamically generate a pip requirements file based on the applications specified in INSTALLED_APPS that it knows about. It can populate or create a file specified or else it prints the requirements to standard out.
generate_reqs setup/calloway_reqs.txt
If you have added any other Django apps or libraries, make sure you update the setup/requirements.txt file.
Finally, to install the new pieces:
pip install -r setup/requirements.txt
The example project template includes -r setup/calloway_reqs.txt at the end of its requirements file. Some packages may need to be compiled. After all the packages are installed you should see something like:
Successfully installed BeautifulSoup critic django-admin-tools ...
Cleaning up...
Synchronize your database, as you normally would:
./manage.py syncdb


Source: https://xkcd.com/208/.
Goals:
Introduction to regular expressions
, an important semi-language for constructing searches.
Software:
- Any text editor supporting regular expressions:
- Sublime Text (both Mac and Windows)
- EditPad Pro and Lite (Windows only)
- many other text editors for programmers support regular expressions.
Class materials:
- Presentation with all the slides:
- PDF (Windows PowerPoint Format)
- Practicum file (
Right Click > Save File as ...
):
Digital materials:
- Online references:
- Interactive tutorial: http://regexone.com/
- Cheat Sheets:
Reference Materials:
- Goyvaerts, J. and Levithan, S. (2012). Regular Expressions Cookbook. Second edition. Beijing: O’Reilly. Amazon Link.
- Friedl, J. E. F. (2006). Mastering Regular Expressions. 3rd ed. Sebastapol, CA: O’Reilly. Amazon Link
Homework:
- Finish the practicum; make a blogpost on your website with the answers.
- Codecademy’s Learn Python, Unit 5-6
- Github: publish the confirmation screenshot as a post on your new site.


CatPhotoapp
click here to view more
cat photos
Things cats love:
Cat nip
Laser pointers
Lasagna
Top 3 things cats hate
Flea treatment
Thunder
Other cats
indoor
outdoor
loving
lazy
Energetic
submit


eXistenZ (**** out of ****) Starring Jennifer Jason Leigh, Jude Law, Ian Holm Directed By David Cronenberg Mirimax/Dimension Films, Rated R, 1999 Running Time: 1 Hour 38 Minutes
Part One of "The Strangest Movies Ever Made" Series at www.mediajunkies.com
by Scott Watson
[LIGHT SPOILERS, nothing you shouldn't read]
eXistenZ has been called "a gooey Matrix", and while this is a correct description in some ways, in others it is completely off. The only thing the two films have in common is the idea of a virtual reality that is indistinguishable from normal, "real" reality. A major difference is that "The Matrix" has a base reality that is obviously the true reality, while eXistenZ does the impossible and makes us accept the most bizarre reality ever as true.  David Cronenberg has shown us before that he knows how to create strange movies (Naked Lunch, Crash), but this one is one of the strangest. Maybe it's because of how the mundane is mixed with the bizarre. Technology is organic, but only some of it. Cars are normal. Gas stations are the same. Cell phones are glowing bug like appendages.  High technology has been replaced with organic creatures, and it provides a truly surreal setting for the characters.
A famous game designer, Allegra Geller (a fine looking Jennifer Jason Leigh), flees a demonstration of her latest game, eXistenZ, after an assassination attempt. She is on the run (from who, I'm still not sure), and has to save her pod by playing her game with "someone friendly". That someone friendly is her dubious companion and security guard, Ted Pikul (Jude Law). Unfortunately he is lacking a fundamental requirement for playing, a bioport.  Luckily a bioport can be installed easily (they install them in malls), so off they go to get one. After a crazy series of events at the local country gas station, they are able to plug in and play eXistenZ.
The plot itself is a surreal melding of conspiracies, reality distortion, Chinese restaurants, and multi appendaged amphibian things ("It's a sign of the times"). But the plot, while cohesive in it's own creepy way is secondary to just trying to figure out what the hell is going on in this universe. Cronenberg just slaps this weird organic-tech world into the viewers lap, and it's up to you to figure out how all these things work. And that's the true joy of this film, entering the vaguely nightmarish world in which eXistenZ takes place. You learn a little bit piece by piece (oh, they make pods out of those), and it's just enough to get you to accept the world that is presented to you.
There are all kinds of twists and turns as the characters wander around, including a fantastic scene in a Chinese restaurant that will leave you trying to assemble something out of your Moo Goo Gai Pan for months afterwards. Also the bioports are occasionally used for things other than porting into eXistenZ , the specifics of which I will leave for you to discover.  It all adds up to a supremely far out trip, and given the choice I think I would rather live in The Matrix's virtual world... oh wait, I already do.
_____________ Media Junkies - Movie reviews, music, books, games, and more. http://www.mediajunkies.com Contact<EMAIL_ADDRESS>The review above was posted to the
rec.arts.movies.reviews newsgroup (de.rec.film.kritiken for German reviews).
The Internet Movie Database accepts no responsibility for the contents of the
review and has no editorial control. Unless stated otherwise, the copyright
belongs to the author.
Please direct comments/criticisms of the review to relevant newsgroups.
Broken URLs inthe reviews are the responsibility of the author.
The formatting of the review is likely to differ from the original due
to ASCII to HTML conversion.
Related links: index of all rec.arts.movies.reviews reviews


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Garden
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.
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THE
INSTITUTE
OF
ECONOMIC
BOTANY,
NY
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icn
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New
York
Botanical
Garden
INSTITUTE
OF
ECONOMIC
BOTANY
Pfizer
Collections
and
Extractions
LOGANIACEAE
Mitreola
petiolata
(J.
R.
Gmel.)
Torr.
&
A.
Gray
det.
T.
Zanoni,
1994
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weeds.
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on
edge
of
dry
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soil
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weeds
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limestone.
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ca
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flowers
lavender;
fruits
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immature.
Pfizer
Sample
codes:
731a
PL(Atha-840)
Daniel
Atha
731
with
Thomas
A.
Zanoni
November
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1994
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supported
by
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Voucher
for
pharmaceutical
screening
00040702
Legend -
Level of confidence that token is an accurately-transcribed word
extremely low
very low
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undetermined
medium
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We do not start life with a road map laid out before us; we must create our own path through the wilderness. Our human existance is too diverse for a straight and narrow way. We face danger, struggle, fear, and sorrow that the major world religions religions do not account for.
We come looking to religions to find answers about our daily experience: the pain we live with, the discrimination we face, the homelessness we suffer, the trauma we endure. We do not receive answers. At best, we receive reassurances of prayers. We are told what rituals we should do to improve ourselves. At worst, we are rejected and ostracized. At worst, we are killed.
The Leeist faith does not deny suffering. It does not pretend that suffering is for a greater good. The realization that there is no answer to the "problem of evil," as philosophers put it, is a core tenant of Leeism.
Instead of silencing those who suffer, Leeists lift them up. Instead of ostracizing those who do not fit the mold, Leeists celebrate them.
Humanity
Evil
Suffering
Ideals
Practices
Leeism was founded by the One True Prophet, the Lee, in 2017.
Leeism is the One True Religion. Its scriptures are the Harry Potter series by J. K. Rowling. One can glean many truths about the world from these tomes, if one interprets them correctly.
Contact us by calling<PHONE_NUMBER> or emailing contact@leeism.org.ca!


This package provides utility classes such as Constants, Utils, Point and Rectangle as well as all classes for custom events and the undo history.


Stay Classy, Ruby
30 November 2014
Ruby is an object oriented programming language, which means that everything is an object. Much like the world around us, we have objects everywhere- tables, trees, televisions and cars are all objects.  All objects in real life have attributes. Think about tables for example. Tables have different materials, lengths, and heights. These are all examples of attributes.
Lets take a moment and bring this idea into ruby. Everything in ruby is an object. Strings, numbers and true/false values are just some examples of objects in ruby. In order to give these objects attributes, they need classes to define them. Creating a new class looks like this:
And that is it. This is the skeleton for a class object. If we ran it through IRB, it would do nothing because we haven't given it any atrributes. Let's create a few attributes in an initialize method.
Wait up...what's up with that @ sign?? When we define a method inside of a class, we need a way to access it from other methods. Adding the "at" sign at the beginning of a method allows that method to be called throughout the class. These are called instance variables.
So far we have created a class, and a couple of instance variables. To use this class, we can create it by filling in the arguments that we defined in the intialize method. Here is an example of creating this class.
And here is the result of the class in the console:
And that is the very basics of creating and calling classes.


Note: our goal in showing these demos is not to encourage use of any of these apps, but to provide examples of ways that Cytoscape desktop might be extended/used for PSI-MI data. For each app/capability, we will highlight the "take-away" for consideration.
stringApp provides an interface to the STRING family of databases including STRING, DISEASES and STITCH
scNetViz is an interface to the CZI Human Cell Atlas and the EBI Single Cell Gene Expression Atlas. It provides the ability to download, explore, and analyze single-cell RNAseq data sets.
NDEx provides network storage, sharing, distribution, and publication for the Cytoscape ecosystem. Networks in NDEx can range from a few edges to over 10 million.
Cytoscape users can find and download networks from NDEx. They can save networks to their NDEx account.
NDEx is a FAIR data commons where organizations and individual authors can publish networks at stable URLs and DOIs.


class: center, middle # Science, Development, and Practice:
Health and disease ### ANTH 569
3/28/16 --- # Papers 1. Bloom 2007 * *Sustainable health: A new dimension of sustainability science* 1. Patz et al. 2004 * *Unhealthy landscapes: Policy recommendation on land use change and infectious disease emergence* 1. Lapinski et al. 2015 * *Recommendations for the role of social science research in One Health* 1. Whittaker 2015 * *The role of social sciences in One Health – Reciprocal benefits* --- # Food for Thought (1/2) > "The simple view is that medicine exists to fight death and disease, and that is, of course, its most basic task. Death is the enemy. But the enemy has superior forces. Eventually, it wins. And in a war that you cannot win, you don't want a general who fights to the point of total annihilation. You don't want Custer. You want Robert E. Lee, someone who knows how to fight for territory that can be won and how to surrender it when it can’t, someone who understands that the damage is greatest if all you do is battle to the bitter end." — Atul Gawande,
Being Mortal
(p187) --- # Food for Thought (2/2) > "The problem of medicine and the institutions it has spawned for the care of the sick and the old is not that they have had an incorrect view of what makes life significant. The problem is that they have had almost no view at all. Medicine’s focus is narrow. Medical professionals concentrate on repair of health, not sustenance of the soul. Yet - and this is the painful paradox - we have decided that they should be the ones who largely define how we live in our waning ways. For more than a half a century now, we have treated the trials of sickness, aging, and mortality as medical concerns." — Atul Gawande,
Being Mortal
(p128) --- # Causes of Untimely Death
Source:
Wired
--- # Patz et al. 2004 (1/2)
Conceptual Model
--- # Patz et al. 2004 (2/2) 1. Given that, of the causes of death, infectious diseases are declining while deaths due to noncommunicable disease and natural disasters are growing, is a concentrated effort on infectious disease appropriate? 1. What are some examples of policies that could be implemented to change patterns of land use? 1. Assuming that the regional "Centers for Excellence" would be based at universities located primarily in wealthy, Western areas, how would "providing information on good science to local communities" have a substantial impact on non-local (or global) health issues? --- # Lapinski et al. 2015 1. Are the authors, who are scholars in Communication, Agriculture, and Veterinary Medicine, qualified to speak on the potential contributions of social science broadly or on a scientific understanding of human behavior? Is the term "social science" adequately defined as "researchers who study humans"? 1. How can differences in the perception of health and how health is contextualized cross-culturally be reconciled with institutionalized medical perceptions of health? 1. How could this paper be improved through better integration with existing work on socio-ecological systems and with established concepts from social science and sustainabile development? --- # Whittaker 2015 1. Compare and contrast the three models presented in Figures 6.1, 6.2, and 6.3. Which is most comprehensive? Which is most complex? Which is most readily applied? Are there significant omissions? 1. Are holistic methods like "multispecies ethnography" and "food anthropologies" too local and intensive in time and effort for present needs in One Health? 1. What important potential contributions of social science does this chapter mention that Lapinski et al. 2015 did not consider?


This is a very special page. If you click somewhere, it will tell you what type of HTML element you clicked on.
Click here for a surprise!
What a cute walrus family! Click here to watch them disappear.


Supporting Multi-Objective Decision Making.
Welcome to the tutorial! Here we show you how the web interface works. You will be asked to sort numbers. For this tutorial, please assume that you like higher numbers better than lower numbers.


This page is dynamically generated by the piga devkit. You are connecting with your token, which is specified in the URL.
The use of this page is to control and monitor the current state of the console, and to aid during development of games, applications and system internal software.


The misinformation on henbane has gotten really bad. If you’re looking for a crazy, LSD high, FORGET IT.
Let me start by saying that my family has been using henbane in hombrewing for hundreds of years, and the reports one reads on the Internet about its deadly effects are ridiculously overstated. My grandfather drank Pilsenkraut-spiked beer and whiskey his whole life, and was never seriously affected, other than the mild “nonsense-speaking” effects that the weed can have once it really grabs onto someone. That probably sounds terrible, but it’s harmless, and can be profound.
My mother’s family is “Karpatendeutsch,” meaning Germans from Slovakia and Transylvania. “Pilsner” is originally simply beer made with henbane instead of hops or henbane mixed with hops. I brew it regularly, drink it regularly and am not a babbling “shaman” or smelly hippie.
Let me tell you how we make it, first.
5 gallons of clean, non-chlorinated water
7 pounds of fermentable malt extract, available at brewing supply stores
About 1 ½ ounces henbane leaf and flower, dried
1 ounce of hops to taste
Yeast (I recommend Munton’s Ale)
Boil water, add malt, boil malt together with hops for one hour.
Using a separate tea-bag infuser, add the henbane about 15 minutes before the end of the boil. Leave the henbane infuser in as the beer cools. Take the infuser out when beer is 80 degrees, add yeast and ferment somewhere dark and cool. Read up on brewing elsewhere, as cleanliness is essential.
Prime, bottle and age about a month. Drink at about 55 degrees.
With all that out of the way, let me say that drinking more than six beers or so may indeed be dangerous. I don’t know, as the beer is so filling and the taste so strong (kind of like an earthy licorice) that I don’t think anyone I know has ever downed more than six beers. If someone reads this and drinks 15 real Pilseners and dies, that sounds like karma to me. So everything in moderation, huh kids?
Here are some effects I notice from Pilsener. I had a few just last night while barbecuing.
1. Time becomes a bit strange. For example, grilling chicken can be a long and tedious wait, trying to cook the meat evenly through; before I knew it, the meat was perfectly done and it seemed like the meat had only been on the grill for ten seconds, even though it was about 40 minutes.
2. Vision can become a bit weird, too. Photographs may look very detailed or deeply shadowed, almost 3-D. People can look like they are made of rubber or latex.
3. I have to be careful what I do when I have Pilsener in my belly as my pain threshold goes through the roof; I can hurt myself badly and not feel it for hours. No power tools!
4. If I really push it and start getting to the 6 or 7 beer range, I can get a little delirious. My wife told me I once wandered around the house, wetting towels and telling her we had to get our daughter’s fever down. My little girl was not sick at the time and I don’t remember the episode.
5. Henbane can give me terrible, horrifying nightmares if I eat too much while I drink it. These are nightmares that will haunt you, buddy, so be careful. After a few beers (and a bowl of cereal) I once dreamt that my dead next door neighbor was trying to get into my house after clawing her way out of the grave; I have never forgotten what a gruesome dream it was. If you drink Pilsenser, DO NOT EAT BEFORE BEDTIME.
6. The hangover from overdoing Pilsener includes diarrhea, muscle aches and cramps and a headache that will make me suicidal.
Okay. So that all sounds bad. But Pilsener is a sometimes thing that can be a lot of fun and can be VERY relaxing. It’s especially good on cold, holiday nights with lots of pretty tree lights and carols. I don’t drink more than three in one evening and I don’t do it more than a couple times a month. I consider it a part of my ethnic heritage, and I enjoy the taste.
I hesitate to mention it, but henbane leaves can be steeped in hard liquor for a few days to get the same effects. Just be careful as the effects are stronger and it takes FAR, FAR, FAR less of this alcohol to give the effects. Add about ¼ ounce to a bottle of vodka and leave it alone for a few weeks. Then have a shot or two. DO NOT OVERDO IT.
That’s the mantra for henbane: DO NOT OVERDO IT. You’ll be sorry if you do.
Experience Reports are the writings and opinions of the individual authors who submit them.
Some of the activities described are dangerous and/or illegal and none are recommended by Erowid.


---
title: Deploy to FTP from your source control
date: '2012-11-17T17:34:00.001+01:00'
tags:
modified_time: '2012-11-17T18:12:58.241+01:00'
blogger_id: tag:blogger.com,1999:blog-6090466795079411226.post-5100625673815008158
blogger_orig_url: http://vaultofthoughts.blogspot.com/2012/11/deploy-to-ftp-from-your-source-control.html
---
here.
For BitBucket (Mercurial & Git)


{% extends './layout_index.html' %} {% block page_title %} Chlamydia - NHS.UK {% endblock %} {% block pageTitle %} Chlamydia {% endblock %} {% block pageSubTitle %} How to get tested {% endblock %} {% block navContent %}
You can get tested for chlamydia by:
Many sexual health clinics offer a walk-in service, where you don't need an appointment. They often get test results quicker than GP practices.
{% include './find-a-test.html' %}You or a health professional will take samples from areas that might be infected.
This can be done by:
Your samples will be sent to a lab and tested for chlamydia. You'll usually get your results by phone or text message within 2 weeks.
{% endblock %}


ki·net·ic
involving or producing movement
week / batch
batches / year
startups / batch
What we do for startups:
What we are looking for:
Media that are based on mutual purpose and execute their mission through well informed, inclusive, and empathetic society.
Loyal audience and healthy growth to achieve product-market fit and scale.
Consists of people who are solid, disciplined, and working well together to achieve the company’s vision.
Have clear editorial planning based on the objectives to be achieved.
Advertorial, merchandise, or any kind of monetization that is being run by your media.
We are going to run our boot camp in Jakarta. If you are still in the Indonesia region, feel free to apply.
Will attend one week of our program. That will run on selected dates.


{{template "header" .}}
Project name:
{{ .Name }}
Treatment groups:
{{ .GroupNames }} ({{.NumGroups}} groups)
Sampling rates:
{{ .SamplingRates }}
Enter the number of variables that will be used for treatment group assignment:
Cancel and return to dashboard


public static final class R.string
extends java.lang.Object
| Constructor and Description |
|---|
string() |
public static final int abc_action_bar_home_description
public static final int abc_action_bar_home_description_format
public static final int abc_action_bar_home_subtitle_description_format
public static final int abc_action_bar_up_description
public static final int abc_action_menu_overflow_description
public static final int abc_action_mode_done
public static final int abc_activity_chooser_view_see_all
public static final int abc_activitychooserview_choose_application
public static final int abc_capital_off
public static final int abc_capital_on
public static final int abc_font_family_body_1_material
public static final int abc_font_family_body_2_material
public static final int abc_font_family_button_material
public static final int abc_font_family_caption_material
public static final int abc_font_family_display_1_material
public static final int abc_font_family_display_2_material
public static final int abc_font_family_display_3_material
public static final int abc_font_family_display_4_material
public static final int abc_font_family_headline_material
public static final int abc_font_family_menu_material
public static final int abc_font_family_subhead_material
public static final int abc_font_family_title_material
public static final int abc_search_hint
public static final int abc_searchview_description_clear
public static final int abc_searchview_description_query
public static final int abc_searchview_description_search
public static final int abc_searchview_description_submit
public static final int abc_searchview_description_voice
public static final int abc_shareactionprovider_share_with
public static final int abc_shareactionprovider_share_with_application
public static final int abc_toolbar_collapse_description
public static final int accept
public static final int actionSettings
public static final int add
public static final int addAHabit
public static final int addAnEvent
public static final int addEvent
public static final int app_name
public static final int appbar_scrolling_view_behavior
public static final int back
public static final int bottom_sheet_behavior
public static final int cancel
public static final int character_counter_pattern
public static final int comment
public static final int common_google_play_services_enable_button
public static final int common_google_play_services_enable_text
public static final int common_google_play_services_enable_title
public static final int common_google_play_services_install_button
public static final int common_google_play_services_install_text
public static final int common_google_play_services_install_title
public static final int common_google_play_services_notification_ticker
public static final int common_google_play_services_unknown_issue
public static final int common_google_play_services_unsupported_text
public static final int common_google_play_services_update_button
public static final int common_google_play_services_update_text
public static final int common_google_play_services_update_title
public static final int common_google_play_services_updating_text
public static final int common_google_play_services_wear_update_text
public static final int common_open_on_phone
public static final int common_signin_button_text
public static final int common_signin_button_text_long
public static final int createAccount
public static final int date
public static final int decline
public static final int delete
public static final int edit
public static final int editEvent
public static final int editHabit
public static final int editProfile
public static final int eventSeacrh
public static final int events
public static final int follow
public static final int followers
public static final int following
public static final int frequencies
public static final int frequency
public static final int friday
public static final int fullName
public static final int google_maps_key
public static final int habitTitle
public static final int habits
public static final int location
public static final int login
public static final int logout
public static final int map
public static final int monday
public static final int mostRecentEvent
public static final int navigation_drawer_close
public static final int navigation_drawer_open
public static final int newName
public static final int notifications
public static final int password_toggle_content_description
public static final int path_password_eye
public static final int path_password_eye_mask_strike_through
public static final int path_password_eye_mask_visible
public static final int path_password_strike_through
public static final int reason
public static final int saturday
public static final int save
public static final int search
public static final int searchPeople
public static final int search_menu_title
public static final int settings
public static final int sevenDays
public static final int showAll
public static final int startDate
public static final int stats
public static final int status_bar_notification_info_overflow
public static final int sunday
public static final int thursday
public static final int title
public static final int title_activity_maps
public static final int today
public static final int tuesday
public static final int useLocation
public static final int username
public static final int viewEvent
public static final int viewHabit
public static final int viewMap
public static final int wednesday


Hello! My name is Aidan Brown and I am a current Game Design and Development student at Rochester Institute of Technology. As a Game Design and Development student I have worked on many games throughout my educational career, both for school and in personal projects, and all of them have bettered my programming skills as well as made me profficient in C#. While I have a great passion for programming and designing games, I am also very passionate front end developer. I am proficient in HTML, CSS, JavaScript and have worked on several projects that utilize ReactJS library.


1 There is a place in Arabia not far from the town of Buto where I went to learn about the winged serpents. When I arrived there, I saw innumerable bones and backbones of serpents: many heaps of backbones, great and small and even smaller.
2 This place, where the backbones lay scattered, is where a narrow mountain pass opens into a great plain, which adjoins the plain of Egypt.
3 Winged serpents are said to fly from Arabia at the beginning of spring, making for Egypt; but the ibis birds encounter the invaders in this pass and kill them.
4 The Arabians say that the ibis is greatly honored by the Egyptians for this service, and the Egyptians give the same reason for honoring these birds.


--- ---
Use the Windows GetKeyState function to get data about the required key. GetKeyState can be passed either a virtual key code such as VK_CONTROL or an ascii value such as Ord('A').
The data returned by GetKeyState has its high bit set if the key is pressed, making the returned (signed) value negative. So to check if a key is down we simply check for a negative return value from GetKeyState. Here's a function that checks if the Control key is presssed:
function IsControlKeyPressed: Boolean; begin Result := GetKeyState(VK_CONTROL) < 0; end;


Result object
Essentially a storage object for all data related to a given result.
Located in /Scenario/Result.php (line 32)
Experiment. May be a string or Scenario_Experiment object.
Gets the associated experiment, optionally resolving it to an object if it's a string.
Returns the identity associated with this result.
Returns the treatment associated with this result.
Set the associated experiment.
Set the associated identity.
Set the associated treatment.
Documentation generated on Sat, 23 Oct 2010 17:23:38 -0400 by phpDocumentor 1.4.3


· Designed baggage handling systems for airports around the world in Autodesk Revit.
· Optimized and streamlined baggage operations while coordinating with other disciplines.
· Resolved design issues with other disciplines, while ensuring optimum design for conveyor reliability and eﬀectiveness.
· Utilized the full suite of Revit’s features to ensure clarity in engineering drawings.
· Participated in the $3.8 billion JFK T4 redevelopment project.
· Developed world’s first video pass-through Augmented Reality for a varifocal platform.
· Integrated a stereo camera, a varifocal Virtual Reality headset and hand detection camera to create a demo which was shown at SIGGRAPH, the largest computer graphics conference.
· Worked in OpenCV, Unity (C#), MATLAB, HLSL to increase perceived comfort by 60%.
· Analyzed data using Microsoft Office Excel to determine bottlenecks in flush operations.
· Created a facility sharing scheme which would result in a 20% efficiency gain.
Spent about 25 hours TIG welding the go-kart frame.
Worked in a team to develop the frame design.
Led design and fabrication of a motion simulator for flight simulators from start to finish.
Created a mock-up of an awning for a cafe.
The model was used as a visual reference by the building owners to design the awning.
Replicated the paper "Towards Geometric Deep SLAM" by researchers from Magic Leap.
The SLAM algorithm is composed of a point detector which feeds into a homography detector.
The training data for the point detector was generated using the Unity game engine. As in the paper, to simplify the project, the point detector would be used exclusively to find the corners of a cube.
Built a better alternative to other labelling programs for YOLOv2
Natively output YOLO bounding box format for training neural networks.
Written using JavaFX.
Analyzed a robot gripper, as described in the paper The GR2 Gripper: An Underactuated Hand for Open-Loop In-Hand Planar Manipulation.
Completed a force analysis and created a CAD simulation to demonstrate the unique functionality of the gripper.


Ezekiel 23:43
Then said I unto her that was old in adulteries, Will they now commit whoredoms with her, and she with them?


Further Examples¶
In this section we present multiple examples for the mass conservation, semi-diffusive, and general approaches. In addition to this, we provide some examples satisfying the deficiency theorems. Before each example we depict the CellDesigner layout and C-graph generated using the instructions in Generating Presentable C-graphs. Those nodes that represent zero complexes are colored red while regular nodes are green.
Contents
- Further Examples
- Low Deficiency Approach
- Mass Conservation Approach
- Closed graph of Figure 5A of [OMYS17]
- Gene regulatory network with two mutually repressing genes from [OMYS14]
- Enzymatic reaction with inhibition by substrate from [OMBA09]
- Enzymatic reaction with simple substrate cycle from [HC87]
- G1/S transition in the cell cycle of Saccharomyces cerevisiae from [CFRS07]
- Double phosphorylation in signal transduction of [OGM+06]
- Double insulin binding
- p85-p110-PTEN
- Closed version of Figure 4B from [OMYS17]
- Closed version of Figure 4C from [OMYS17]
- Semi-diffusive Approach
- General Approach
Low Deficiency Approach¶
Network 3.13 of [Fei79]¶
To run this example download the SBML file
and script
run_feinberg_ex3_13
. After running this script we obtain
the following output:
Number of species: 3
Number of complexes: 5
Number of reactions: 6
Network deficiency: 0
Reaction graph of the form
reaction -- reaction label:
s1 -> 2*s1 -- re1
2*s1 -> s1 -- re1r
s1+s2 -> s3 -- re2
s3 -> s1+s2 -- re2r
s3 -> 2*s2 -- re3
2*s2 -> s3 -- re3r
By the Deficiency Zero Theorem, there exists within each positive
stoichiometric compatibility class precisely one equilibrium.
Thus, multiple equilibria cannot exist for the network.
The network does not satisfy the Deficiency One Theorem, multistability cannot be excluded.
Network satisfies one of the low deficiency theorems.
One should not run the optimization-based methods.
Figure 1Aii of [OMYS17]¶
To run this example download the SBML file
and script
run_fig1Aii
. After running this script we obtain the following output:
Number of species: 4
Number of complexes: 6
Number of reactions: 7
Network deficiency: 0
Reaction graph of the form
reaction -- reaction label:
s1+s2 -> s3 -- re1
s3 -> s1+s2 -- re1r
s3 -> s6 -- re2
s1 -> s9 -- re3
s9 -> s1 -- re3r
s2 -> s9 -- re4
s9 -> s2 -- re4r
By the Deficiency Zero Theorem, the differential equations
cannot admit a positive equilibrium or a cyclic composition
trajectory containing a positive composition. Thus, multiple
equilibria cannot exist for the network.
The network does not satisfy the Deficiency One Theorem, multistability cannot be excluded.
Network satisfies one of the low deficiency theorems.
One should not run the optimization-based methods.
Example 3.D.3 of [Fei79]¶
To run this example download the SBML file
and script
run_feinberg_ex_3_D_3
. After running this script we
obtain the following output:
Number of species: 3
Number of complexes: 5
Number of reactions: 8
Network deficiency: 1
Reaction graph of the form
reaction -- reaction label:
s1+s2 -> s3 -- re1
s3 -> s1+s2 -- re1r
s3 -> s2 -- re2
s2 -> s3 -- re2r
s3 -> s1 -- re3
s1 -> s3 -- re3r
s1 -> 2*s1 -- re4
2*s1 -> s1 -- re4r
The network does not satisfy the Deficiency Zero Theorem, multistability cannot be excluded.
By the Deficiency One Theorem, the differential equations
admit precisely one equilibrium in each positive stoichiometric
compatibility class. Thus, multiple equilibria cannot exist
for the network.
Network satisfies one of the low deficiency theorems.
One should not run the optimization-based methods.
Mass Conservation Approach¶
Closed graph of Figure 5A of [OMYS17]¶
To run this example download the SBML file
and script
run_closed_fig5A
. After running this script we obtain the
following output:
Number of species: 9
Number of complexes: 12
Number of reactions: 9
Network deficiency: 2
Reaction graph of the form
reaction -- reaction label:
s1+s3 -> s6 -- re1
s6 -> s1+s3 -- re1r
s6 -> s5+s1 -- re2
s2+s6 -> s9 -- re3
s9 -> s6+s4 -- re4
2*s4 -> s13 -- re5
s13 -> 2*s2 -- re6
s4+s5 -> s16 -- re7
s16 -> s3+s2 -- re8
The network does not satisfy the Deficiency Zero Theorem, multistability cannot be excluded.
The network does not satisfy the Deficiency One Theorem, multistability cannot be excluded.
Creating Equilibrium Manifold ...
Elapsed time for creating Equilibrium Manifold: 3.3645559999999994
Decision Vector:
[re1, re1r, re2, re3, re4, re5, re6, re7, re8, s3, s2, s4]
Species for concentration bounds:
[s1, s6, s5, s9, s13, s16]
Running feasible point method for 100 iterations ...
Elapsed time for feasible point method: 42.63995385169983
Running the multistart optimization method ...
Elapsed time for multistart method:<PHONE_NUMBER>4248352
Running continuity analysis ...
Elapsed time for continuity analysis in seconds: 16.06424617767334
Smallest value achieved by objective function: 0.0
15 point(s) passed the optimization criteria.
Number of multistability plots found: 2
Elements in params_for_global_min that produce multistability:
[0, 12]
Gene regulatory network with two mutually repressing genes from [OMYS14]¶
To run this example download the SBML file
and script
run_irene2014
. After running this script we obtain the following
output:
Number of species: 7
Number of complexes: 13
Number of reactions: 10
Network deficiency: 2
Reaction graph of the form
reaction -- reaction label:
s1 -> s1+s2 -- re1
s3 -> s3+s4 -- re2
s1+s4 -> s5 -- re3
s5 -> s1+s4 -- re3r
s3+s2 -> s6 -- re4
s6 -> s3+s2 -- re4r
s6+s2 -> s7 -- re5
s7 -> s6+s2 -- re5r
s2 -> s8 -- re6
s4 -> s8 -- re7
The network does not satisfy the Deficiency Zero Theorem, multistability cannot be excluded.
The network does not satisfy the Deficiency One Theorem, multistability cannot be excluded.
Creating Equilibrium Manifold ...
Elapsed time for creating Equilibrium Manifold: 1.772672
Decision Vector:
[re1, re2, re3, re3r, re4, re4r, re5, re5r, re6, re7, s2, s4]
Species for concentration bounds:
[s1, s3, s5, s6, s7]
Running feasible point method for 100 iterations ...
Elapsed time for feasible point method: 25.66311025619507
Running the multistart optimization method ...
Elapsed time for multistart method:<PHONE_NUMBER>9326477
Running continuity analysis ...
Elapsed time for continuity analysis in seconds:<PHONE_NUMBER>3101501
Smallest value achieved by objective function: 0.0
93 point(s) passed the optimization criteria.
Number of multistability plots found: 21
Elements in params_for_global_min that produce multistability:
[1, 3, 9, 11, 15, 21, 24, 27, 32, 35, 40, 45, 56, 62, 70, 79, 80, 83, 84, 85, 88]
Enzymatic reaction with inhibition by substrate from [OMBA09]¶
To run this example download the SBML file
and script
run_irene2009
. After running this script we obtain the following
output:
Number of species: 5
Number of complexes: 8
Number of reactions: 9
Network deficiency: 1
Reaction graph of the form
reaction -- reaction label:
s1+s2 -> s4 -- re1
s4 -> s1+s2 -- re1r
s4 -> s1+s3 -- re2
s4+s2 -> s5 -- re3
s5 -> s4+s2 -- re3r
s2 -> s6 -- re4
s6 -> s2 -- re4r
s3 -> s6 -- re5
s6 -> s3 -- re5r
The network does not satisfy the Deficiency Zero Theorem, multistability cannot be excluded.
The network does not satisfy the Deficiency One Theorem, multistability cannot be excluded.
Creating Equilibrium Manifold ...
Elapsed time for creating Equilibrium Manifold: 0.715592
Decision Vector:
[re1, re1r, re2, re3, re3r, re4, re4r, re5, re5r, s2]
Species for concentration bounds:
[s1, s4, s3, s5]
Running feasible point method for 100 iterations ...
Elapsed time for feasible point method: 15.607332229614258
Running the multistart optimization method ...
Elapsed time for multistart method: 66.42637610435486
Running continuity analysis ...
Elapsed time for continuity analysis in seconds: 72.26282095909119
Smallest value achieved by objective function: 0.0
84 point(s) passed the optimization criteria.
Number of multistability plots found: 48
Elements in params_for_global_min that produce multistability:
[3, 4, 5, 8, 9, 10, 11, 12, 13, 17, 18, 19, 21, 22, 23, 27, 30, 31, 34, 35, 36, 37, 38, 39, 41, 42, 47, 48, 50, 51, 54, 55, 56, 57, 59, 60, 61, 64, 65, 66, 68, 69, 72, 73, 74, 75, 77, 83]
Enzymatic reaction with simple substrate cycle from [HC87]¶
To run this example download the SBML file
and script
run_hervagault_canu
. After running this script we obtain
the following output:
Number of species: 7
Number of complexes: 8
Number of reactions: 8
Network deficiency: 1
Reaction graph of the form
reaction -- reaction label:
s1+s2 -> s3 -- re1
s3 -> s1+s2 -- re1r
s3 -> s1+s4 -- re2
s3+s2 -> s5 -- re3
s5 -> s3+s2 -- re3r
s6+s4 -> s7 -- re4
s7 -> s6+s4 -- re4r
s7 -> s6+s2 -- re5
The network does not satisfy the Deficiency Zero Theorem, multistability cannot be excluded.
The network does not satisfy the Deficiency One Theorem, multistability cannot be excluded.
Creating Equilibrium Manifold ...
Elapsed time for creating Equilibrium Manifold: 0.7393859999999997
Decision Vector:
[re1, re1r, re2, re3, re3r, re4, re4r, re5, s2, s6, s7]
Species for concentration bounds:
[s1, s3, s4, s5]
Running feasible point method for 100 iterations ...
Elapsed time for feasible point method: 13.359651803970337
Running the multistart optimization method ...
Elapsed time for multistart method:<PHONE_NUMBER>6495667
Running continuity analysis ...
Elapsed time for continuity analysis in seconds: 90.50077891349792
Smallest value achieved by objective function: 0.0
96 point(s) passed the optimization criteria.
Number of multistability plots found: 14
Elements in params_for_global_min that produce multistability:
[1, 22, 25, 33, 37, 42, 51, 53, 57, 58, 59, 64, 74, 87]
G1/S transition in the cell cycle of Saccharomyces cerevisiae from [CFRS07]¶
To run this example download the SBML file
and script
run_conradi2007
. After running this
script we obtain the following output:
Number of species: 9
Number of complexes: 17
Number of reactions: 18
Network deficiency: 5
Reaction graph of the form
reaction -- reaction label:
s1 -> s2 -- re1
s2 -> s1 -- re1r
s3 -> s2 -- re2
s4+s1 -> s5 -- re3
s5 -> s4+s1 -- re3r
s5 -> s4 -- re4
s4+s3 -> s8 -- re5
s8 -> s4+s3 -- re5r
s8 -> s4 -- re6
s5+s4 -> s11 -- re7
s11 -> s5+s4 -- re7r
s11 -> s8+s4 -- re8
s3+s12 -> s13 -- re9
s13 -> s3+s12 -- re9r
s13 -> s1+s12 -- re10
s8+s12 -> s16 -- re11
s16 -> s8+s12 -- re11r
s16 -> s5+s12 -- re12
The network does not satisfy the Deficiency Zero Theorem, multistability cannot be excluded.
The network does not satisfy the Deficiency One Theorem, multistability cannot be excluded.
Creating Equilibrium Manifold ...
Elapsed time for creating Equilibrium Manifold: 260.415536
Decision Vector:
[re1, re1r, re2, re3, re3r, re4, re5, re5r, re6, re7, re7r, re8, re9, re9r, re10, re11, re11r, re12, s4, s12]
Species for concentration bounds:
[s1, s3, s5, s8, s11, s13, s16]
Running feasible point method for 100 iterations ...
Elapsed time for feasible point method: 73.16450190544128
Running the multistart optimization method ...
Elapsed time for multistart method:<PHONE_NUMBER>421997
Running continuity analysis ...
Elapsed time for continuity analysis in seconds: 15.878800868988037
Smallest value achieved by objective function: 0.0
13 point(s) passed the optimization criteria.
Number of multistability plots found: 11
Elements in params_for_global_min that produce multistability:
[0, 1, 2, 3, 5, 6, 7, 8, 10, 11, 12]
Double phosphorylation in signal transduction of [OGM+06]¶
To run this example download the SBML file
and script
run_double_phos
.
After running this script we obtain the following output:
Number of species: 9
Number of complexes: 10
Number of reactions: 12
Network deficiency: 2
Reaction graph of the form
reaction -- reaction label:
s1+s2 -> s2s1 -- re1f
s2s1 -> s1+s2 -- re1d
s2s1 -> s5+s2 -- re1c
s5+s3 -> s3s5 -- re2f
s3s5 -> s5+s3 -- re2d
s3s5 -> s1+s3 -- re2c
s5+s2 -> s2s5 -- re3f
s2s5 -> s5+s2 -- re3d
s2s5 -> s4+s2 -- re3c
s4+s3 -> s3s4 -- re4f
s3s4 -> s4+s3 -- re4d
s3s4 -> s5+s3 -- re4c
The network does not satisfy the Deficiency Zero Theorem, multistability cannot be excluded.
The network does not satisfy the Deficiency One Theorem, multistability cannot be excluded.
Creating Equilibrium Manifold ...
Elapsed time for creating Equilibrium Manifold: 5.184272
Decision Vector:
[re1f, re1d, re1c, re2f, re2d, re2c, re3f, re3d, re3c, re4f, re4d, re4c, s2, s3, s3s4]
Species for concentration bounds:
[s1, s5, s2s1, s3s5, s4, s2s5]
Running feasible point method for 100 iterations ...
Elapsed time for feasible point method: 18.401470184326172
Running the multistart optimization method ...
Elapsed time for multistart method: 95.46931576728821
Running continuity analysis ...
Elapsed time for continuity analysis in seconds:<PHONE_NUMBER>612396
Smallest value achieved by objective function: 0.0
97 point(s) passed the optimization criteria.
Number of multistability plots found: 89
Elements in params_for_global_min that produce multistability:
[0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31,
32, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60,
61, 62, 64, 65, 66, 67, 69, 70, 71, 72, 73, 74, 75, 76, 77, 79, 80, 81, 82, 83, 84, 87, 88, 90, 91, 92, 93, 94, 95, 96]
Double insulin binding¶
To run this example download the SBML file
and script
run_double_insulin_binding
.
After running this script we obtain the following output:
Number of species: 8
Number of complexes: 12
Number of reactions: 11
Network deficiency: 2
Reaction graph of the form
reaction -- reaction label:
s1+s2 -> s3 -- re1
s3 -> s1+s2 -- re1r
s3+s2 -> s4 -- re2
s4 -> s3+s2 -- re2r
s3+s5 -> s6 -- re3
s6 -> s3+s5 -- re3r
s6 -> s3+s9 -- re4
s4+s5 -> s10 -- re5
s10 -> s4+s5 -- re5r
s10 -> s4+s9 -- re6
s9 -> s5 -- re7
The network does not satisfy the Deficiency Zero Theorem, multistability cannot be excluded.
The network does not satisfy the Deficiency One Theorem, multistability cannot be excluded.
Creating Equilibrium Manifold ...
Elapsed time for creating Equilibrium Manifold: 2.2847300000000006
Decision Vector:
[re1, re1r, re2, re2r, re3, re3r, re4, re5, re5r, re6, re7, s2, s5, s10]
Species for concentration bounds:
[s1, s3, s4, s6, s9]
Running feasible point method for 100 iterations ...
Elapsed time for feasible point method: 25.920205116271973
Running the multistart optimization method ...
Elapsed time for multistart method: 94.97992706298828
Running continuity analysis ...
Elapsed time for continuity analysis in seconds:<PHONE_NUMBER>311615
Smallest value achieved by objective function: 2.3317319454459066e-31
67 point(s) passed the optimization criteria.
Number of multistability plots found: 2
Elements in params_for_global_min that produce multistability:
[8, 38]
p85-p110-PTEN¶
To run this example download the SBML file
and script
run_p85-p110-PTEN
. After running this script using four cores,
we obtain the following output (for more information on running this script in parallel see Parallel CRNT4SBML):
Creating Equilibrium Manifold ...
Creating Equilibrium Manifold ...
Creating Equilibrium Manifold ...
Creating Equilibrium Manifold ...
Elapsed time for creating Equilibrium Manifold:<PHONE_NUMBER>0000001
Elapsed time for creating Equilibrium Manifold: 108.786772
Elapsed time for creating Equilibrium Manifold: 108.861678
Elapsed time for creating Equilibrium Manifold: 109.171994
Running feasible point method for 5000 iterations ...
Elapsed time for feasible point method: 2519.281478
Running the multistart optimization method ...
Elapsed time for multistart method:<PHONE_NUMBER>0000023
Number of species: 13
Number of complexes: 17
Number of reactions: 17
Network deficiency: 2
Reaction graph of the form
reaction -- reaction label:
s23+s3 -> s5 -- re1
s5 -> s23+s3 -- re1r
s5+s8 -> s24 -- re2
s24 -> s5+s8 -- re2r
2*s3 -> s4 -- re3
s4 -> 2*s3 -- re3r
s4+s9 -> s16 -- re9
s16 -> s4+s9 -- re9r
s24+s14 -> s36 -- re10
s36 -> s24+s14 -- re10r
s36 -> s37+s24 -- re11
s16+s37 -> s41 -- re12
s41 -> s16+s37 -- re12r
s41 -> s16+s14 -- re13
s9+s37 -> s45 -- re14
s45 -> s9+s37 -- re14r
s45 -> s9+s14 -- re15
The network does not satisfy the Deficiency Zero Theorem, multistability cannot be excluded.
The network does not satisfy the Deficiency One Theorem, multistability cannot be excluded.
Decision Vector:
[re1, re1r, re2, re2r, re3, re3r, re9, re9r, re10, re10r, re11, re12, re12r, re13, re14, re14r, re15, s3, s8, s9, s14, s37]
Species for concentration bounds:
[s23, s5, s24, s4, s16, s36, s41, s45]
A parallel version of numerical continuation is not available.
Numerical continuation will be ran using only one core.
For your convenience, the provided parameters have been saved in the current directory under the name params.npy.
Running continuity analysis ...
Elapsed time for continuity analysis in seconds: 5766.086745023727
Smallest value achieved by objective function: 0.0
429 point(s) passed the optimization criteria.
Number of multistability plots found: 5
Elements in params_for_global_min that produce multistability:
[171, 191, 213, 272, 296]
Closed version of Figure 4B from [OMYS17]¶
To run this example download the SBML file
and script
run_Fig4B_closed
. After running this script using four cores,
we obtain the following output (for more information on running this script in parallel see Parallel CRNT4SBML):
Creating Equilibrium Manifold ...
Creating Equilibrium Manifold ...
Creating Equilibrium Manifold ...
Creating Equilibrium Manifold ...
Elapsed time for creating Equilibrium Manifold: 1.2114520000000004
Elapsed time for creating Equilibrium Manifold: 1.2372060000000005
Elapsed time for creating Equilibrium Manifold: 1.229298
Elapsed time for creating Equilibrium Manifold: 1.2412400000000003
Running feasible point method for 10000 iterations ...
Elapsed time for feasible point method: 518.759626
Running the multistart optimization method ...
Elapsed time for multistart method: 2561.635341
Number of species: 6
Number of complexes: 7
Number of reactions: 8
Network deficiency: 1
Reaction graph of the form
reaction -- reaction label:
s1+s3 -> s4 -- re1
s4 -> s1+s3 -- re1r
s5 -> s2+s3 -- re2
s2+s3 -> s5 -- re2r
s2+s4 -> s6 -- re3
s6 -> s2+s4 -- re3r
s6 -> s1+s5 -- re4
s1+s5 -> s6 -- re4r
The network does not satisfy the Deficiency Zero Theorem, multistability cannot be excluded.
The network does not satisfy the Deficiency One Theorem, multistability cannot be excluded.
Decision Vector:
[re1, re1r, re2, re2r, re3, re3r, re4, re4r, s3, s5, s2]
Species for concentration bounds:
[s1, s4, s6]
Smallest value achieved by objective function: 2.454796889817468e-10
0 point(s) passed the optimization criteria.
Closed version of Figure 4C from [OMYS17]¶
To run this example download the SBML file
and script
run_Fig4C_closed
. After running this script using four cores,
we obtain the following output (for more information on running this script in parallel see Parallel CRNT4SBML):
Creating Equilibrium Manifold ...
Creating Equilibrium Manifold ...
Creating Equilibrium Manifold ...
Creating Equilibrium Manifold ...
Elapsed time for creating Equilibrium Manifold: 0.9796280000000004
Elapsed time for creating Equilibrium Manifold: 0.9905299999999997
Elapsed time for creating Equilibrium Manifold: 0.997398
Elapsed time for creating Equilibrium Manifold: 0.9981960000000001
Running feasible point method for 10000 iterations ...
Elapsed time for feasible point method: 236.957728
Running the multistart optimization method ...
Elapsed time for multistart method: 2115.088291
Number of species: 5
Number of complexes: 7
Number of reactions: 8
Network deficiency: 1
Reaction graph of the form
reaction -- reaction label:
s3 -> s1 -- re1
s1 -> s3 -- re1r
s2 -> s4 -- re2
s4 -> s2 -- re2r
s2+s3 -> s5 -- re3
s5 -> s2+s3 -- re3r
s5 -> s1+s4 -- re5
s1+s4 -> s5 -- re5r
The network does not satisfy the Deficiency Zero Theorem, multistability cannot be excluded.
The network does not satisfy the Deficiency One Theorem, multistability cannot be excluded.
Decision Vector:
[re1, re1r, re2, re2r, re3, re3r, re5, re5r, s2, s4]
Species for concentration bounds:
[s3, s1, s5]
Smallest value achieved by objective function: 1.2913762450176939e-09
0 point(s) passed the optimization criteria.
Semi-diffusive Approach¶
Figure 5B of [OMYS17]¶
To run this example download the SBML file
and script
run_open_fig5B
. After running this script we obtain the
following output:
Number of species: 12
Number of complexes: 24
Number of reactions: 29
Network deficiency: 11
Reaction graph of the form
reaction -- reaction label:
s1+s3 -> s6 -- re1
s6 -> s1+s3 -- re1r
s6 -> s5+s1 -- re2
s2+s6 -> s9 -- re3
s9 -> s6+s4 -- re4
2*s4 -> s25 -- re5
s25 -> 2*s2 -- re6
s4+s5 -> s16 -- re7
s16 -> s3+s2 -- re8
s19 -> s1 -- re9
s1 -> s19 -- re9r
s19 -> s2 -- re10
s2 -> s19 -- re10r
s19 -> s3 -- re11
s3 -> s19 -- re11r
s4 -> s19 -- re12
s5 -> s19 -- re13
s6 -> s19 -- re14
s9 -> s19 -- re15
s25 -> s19 -- re16
s16 -> s19 -- re17
s25 -> s25+s20 -- re18
s20+s21 -> s22 -- re19
s22 -> s22+s2 -- re20
s21 -> s19 -- re21
s19 -> s21 -- re21r
s20 -> s19 -- re22
s19 -> s20 -- re22r
s22 -> s19 -- re23
The network does not satisfy the Deficiency Zero Theorem, multistability cannot be excluded.
The network does not satisfy the Deficiency One Theorem, multistability cannot be excluded.
Decision vector for optimization:
[v_2, v_3, v_4, v_5, v_6, v_8, v_11, v_13, v_15, v_18, v_20, v_21, v_22, v_24, v_25, v_27, v_29]
Reaction labels for decision vector:
['re1r', 're2', 're3', 're4', 're5', 're7', 're9r', 're10r', 're11r', 're14', 're16', 're17', 're18', 're20', 're21', 're22', 're23']
Key species:
['s1', 's3', 's2', 's20', 's21']
Non key species:
['s6', 's5', 's9', 's4', 's25', 's16', 's22']
Boundary species:
['s19']
Running feasible point method for 50 iterations ...
Elapsed time for feasible point method: 14.352675676345825
Running the multistart optimization method ...
Elapsed time for multistart method:<PHONE_NUMBER>730713
Running continuity analysis ...
Elapsed time for continuity analysis in seconds: 42.74703788757324
Smallest value achieved by objective function: 0.0
22 point(s) passed the optimization criteria.
Number of multistability plots found: 4
Elements in params_for_global_min that produce multistability:
[0, 1, 3, 16]
Open version of Figure 5A from [OMYS17]¶
To run this example download the SBML file
and script
run_open_fig5A
. After running this script we obtain the
following output:
Number of species: 9
Number of complexes: 18
Number of reactions: 21
Network deficiency: 8
Reaction graph of the form
reaction -- reaction label:
s1+s3 -> s6 -- re1
s6 -> s1+s3 -- re1r
s6 -> s5+s1 -- re2
s2+s6 -> s9 -- re3
s9 -> s6+s4 -- re4
2*s4 -> s13 -- re5
s13 -> 2*s2 -- re6
s4+s5 -> s16 -- re7
s16 -> s3+s2 -- re8
s19 -> s1 -- re9
s1 -> s19 -- re9r
s19 -> s2 -- re10
s2 -> s19 -- re10r
s19 -> s3 -- re11
s3 -> s19 -- re11r
s4 -> s19 -- re12
s5 -> s19 -- re13
s6 -> s19 -- re14
s9 -> s19 -- re15
s13 -> s19 -- re16
s16 -> s19 -- re17
The network does not satisfy the Deficiency Zero Theorem, multistability cannot be excluded.
The network does not satisfy the Deficiency One Theorem, multistability cannot be excluded.
Decision vector for optimization:
[v_2, v_3, v_4, v_5, v_6, v_8, v_11, v_13, v_15, v_18, v_20, v_21]
Reaction labels for decision vector:
['re1r', 're2', 're3', 're4', 're5', 're7', 're9r', 're10r', 're11r', 're14', 're16', 're17']
Key species:
['s1', 's3', 's2']
Non key species:
['s6', 's5', 's9', 's4', 's13', 's16']
Boundary species:
['s19']
Running feasible point method for 500 iterations ...
Elapsed time for feasible point method: 40.84808683395386
Running the multistart optimization method ...
Elapsed time for multistart method:<PHONE_NUMBER>518372
Running continuity analysis ...
Elapsed time for continuity analysis in seconds: 1777.679843902588
Smallest value achieved by objective function: 0.0
108 point(s) passed the optimization criteria.
Number of multistability plots found: 1
Elements in params_for_global_min that produce multistability:
[85]
Figure 4B from [OMYS17]¶
To run this example download the SBML file
and script
run_Fig4B_open
. After running this script using four cores,
we obtain the following output (for more information on running this script in parallel see Parallel CRNT4SBML):
Running feasible point method for 10000 iterations ...
Elapsed time for feasible point method: 73.587205
Running the multistart optimization method ...
Elapsed time for multistart method: 3675.938109
Number of species: 6
Number of complexes: 11
Number of reactions: 17
Network deficiency: 4
Reaction graph of the form
reaction -- reaction label:
s1+s3 -> s4 -- re1
s4 -> s1+s3 -- re1r
s5 -> s2+s3 -- re2
s2+s3 -> s5 -- re2r
s2+s4 -> s6 -- re3
s6 -> s2+s4 -- re3r
s6 -> s1+s5 -- re4
s1+s5 -> s6 -- re4r
s3 -> s7 -- re5
s7 -> s3 -- re5r
s1 -> s7 -- re6
s7 -> s1 -- re6r
s2 -> s7 -- re7
s7 -> s2 -- re7r
s4 -> s7 -- re8
s5 -> s7 -- re9
s6 -> s7 -- re10
The network does not satisfy the Deficiency Zero Theorem, multistability cannot be excluded.
The network does not satisfy the Deficiency One Theorem, multistability cannot be excluded.
Decision vector for optimization:
[v_2, v_4, v_5, v_6, v_7, v_8, v_9, v_11, v_13, v_15, v_16]
Reaction labels for decision vector:
['re1r', 're2r', 're3', 're3r', 're4', 're4r', 're5', 're6', 're7', 're8', 're9']
Key species:
['s1', 's3', 's2']
Non key species:
['s4', 's5', 's6']
Boundary species:
['s7']
Smallest value achieved by objective function: 2.3045037796933692e-10
0 point(s) passed the optimization criteria.
Figure 4C from [OMYS17]¶
To run this example download the SBML file
and script
run_Fig4C_open
. After running this script using four cores,
we obtain the following output (for more information on running this script in parallel see Parallel CRNT4SBML):
Running feasible point method for 10000 iterations ...
Elapsed time for feasible point method: 57.548688
Running the multistart optimization method ...
Elapsed time for multistart method: 1432.020307
Number of species: 5
Number of complexes: 8
Number of reactions: 15
Network deficiency: 2
Reaction graph of the form
reaction -- reaction label:
s3 -> s1 -- re1
s1 -> s3 -- re1r
s2 -> s4 -- re2
s4 -> s2 -- re2r
s2+s3 -> s5 -- re3
s5 -> s2+s3 -- re3r
s5 -> s1+s4 -- re5
s1+s4 -> s5 -- re5r
s1 -> s6 -- re6
s6 -> s1 -- re6r
s2 -> s6 -- re7
s6 -> s2 -- re7r
s5 -> s6 -- re8
s3 -> s6 -- re9
s4 -> s6 -- re10
The network does not satisfy the Deficiency Zero Theorem, multistability cannot be excluded.
The network does not satisfy the Deficiency One Theorem, multistability cannot be excluded.
Decision vector for optimization:
[v_2, v_4, v_5, v_6, v_7, v_8, v_9, v_11, v_14, v_15]
Reaction labels for decision vector:
['re1r', 're2r', 're3', 're3r', 're5', 're5r', 're6', 're7', 're9', 're10']
Key species:
['s1', 's2']
Non key species:
['s3', 's4', 's5']
Boundary species:
['s6']
Smallest value achieved by objective function: 4.5692676949897973e-10
0 point(s) passed the optimization criteria.
General Approach¶
Song model of [FSW+16]¶
To run this example download the SBML file
and script
run_song_model
. After running this script we obtain the
following output:
Number of species: 6
Number of complexes: 10
Number of reactions: 11
Network deficiency: 3
Reaction graph of the form
reaction -- reaction label:
s1+s3 -> s5 -- re4
s5 -> s1+s3 -- re4r
s5 -> s2+s3 -- re5
s1+s4 -> s8 -- re6
s8 -> s1+s4 -- re6r
s8 -> s2+s4 -- re7
s3 -> s4 -- re8
s4 -> s3 -- re8r
s5 -> s8 -- re9
s8 -> s5 -- re9r
s2 -> s1 -- re10
[re4, re4r, re5, re6, re6r, re7, re8, re8r, re9, re9r, re10, s1, s3, s5, s2, s4, s8]
Running the multistart optimization method ...
Elapsed time for multistart method: 1228.3208582401276
Running continuity analysis ...
Elapsed time for continuity analysis in seconds: 28.140807151794434
Smallest value achieved by objective function: 0.0
5 point(s) passed the optimization criteria.
Number of multistability plots found: 2
Elements in params_for_global_min that produce multistability:
[1, 4]


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9703
26
Jul
1997
With:
J.A.
Cedeflo
&
P.
Lewis
BOTANICAL
GARDE**
Supported
by
funds
from
the
Smithsonian
Institution
garden
01500639
SMITHSONIAN
INSTITUTION
From
THE
UNITED
STATES
NATIONAL
HERBARIUM
UNITED
STATES
NATIONAL
HERBARIUM
PLANTS
OF
JAMAICA
Araliaceae
Dendropanax
pendulus
(Sw.)
Dene.
&
Planch.
Det.
P.
Acevedo-Rdgz.,
1998
(US)
St.
Andrew
Parish:
Hardwar
Gap;
Blue
Mountains
trail
E
of
km
21,
along
road
from
Newcastle
to
Section.
1300
m.
18”05'01"N
076”43'39"W.
Mossy
forest
dominated
by
Cyrilla
racemiflora.
Shrub
2.5
m
tall;
inflorescence
ascending,
green;
flower
buds
green.
Plants
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60%
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before
drying.
01500639
Legend -
Level of confidence that token is an accurately-transcribed word
extremely low
very low
low
undetermined
medium
high
very high


Responsibilities
- VoiceTube is a free English-learning platform featuring over 40,000 captioned YouTube videos — where our 1,500,000+ users can learn current and practical English from the videos they love to watch.
https://tw.voicetube.com/
- Perform marketing tasks, including but not limited to: writing articles, visual designing, using digital marketing tools, developing strategy.
- Analyze user experience of HERO online courses. Gathering users' feedback, learning efficiency and outcomes via the phone survey and writing them into inspirational articles.
- 42% of articles are reprinted by influential media: Business Weekly; MANAGER today; Cheers ; The News Lens.
- My articles simulated 253,390 views.
Link to my articles: https://tw.blog.voicetube.com/archives/author/annie-tsai
Skills
- As a team member of HERO online courses, research skills and techniques are core skills. Looking into the collected data, we have to analyze what kind of contents attract more attentions.
- Critical thinking skills. VoiceTube is a startup company, it provides great chances for interns to come up with new ideas and they wish you to go over them and sharing feedback with others.
- Ability to write proposal. VoiceTube own a LINE channel and hope this tool could convert readers to our website. My proposal about old functions optimization and ways to increase the exposure rate was selected as the best and I won the chance to join the meeting with LINE crop. I appreciated this opportunity to visit LINE and know more about negotiation for a long-term cooperation.


OFC is short for Open Flash Chart, and this is a taglib that integrates with Open Flash Chart to make very good-looking flash graphs.
The API is based on <o2 gdGraph>, so by substituting gdGraph with ofcGraph and gdDataSet with dataSet, you should get a
working graph. However, some of the attributes are unique to ofcGraph, while other gdGraph attributes will be ignored by ofcGraph.
.
10, 20, 30, 40, 50, 60
60, 50, 40, 30, 30, 10
http://www.vg.no
http://www.dagbladet.no
http://www.aftenposten.no
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4, 3, 5, 2, 6, 5
1, 1, 2, 3, 5, $six
4, -2, -2
10.2, 1, 2
width [640] - in pixels
height [400] - in pixels
id - a unique id to identify the graph
xLabel - a description of the values along the x axis
xLabels - an array reference or a string containing the labels for all the points along the x axis
xLabelSeparator [/,\s*/] - If the xLabels attribute isn't an array reference, but a string, then o2 needs to know where one value ends and the next one begins.
The default xLabelSeparator is a comma followed by zero or more spaces.
type - [Bar] - one of {Bar, Line, 3DBar, Area, HighLowClose, Scatter, OutlinedBar, GlassBar, FadeBar, Candle, SketchBar, LineWithDots}. HighLowClose
and Candle have not been implemented yet. Some of the types from GDGraph also work.
title - Shown above the graph
yLabel - a description of the values along the y axis
yStepSize - distance between horizontal lines in the graph. A default value will be used if not given
yMax - Maximum value shown on the y axis. If not given, a value near the maximum y value in the datasets is used
yMin - Minimum value shown on the y axis. If not given, a value near the minimum y value in the datasets is used
graphColor - default color of the graphs, may be overridden by each dataset's color attribute. If no color attributes are given, some default colors will be used
bgColor - background color
bgColor2 - used in combination with bgFadeAngle to have the background color change smoothly
bgFadeAngle - used in combination with bgColor2 to have the background color change smoothly
titleStyle [font-size: 25px] - a block of css for the title
toolTip [#x_label#
#x_label#] - Text to show when mouse is moved over a point in the graph. You can use some special values: #val#, #key#,
, #x_label#, #x_legend#, #tip#.
See
lineWidth - default value for the width of all lines in the grid
solidDots - default value (see corresponding attribute among the dataSet attributes)
dotSize - default value (see corresponding attribute among the dataSet attributes)
opacity - default value (see corresponding attribute among the dataSet attributes)
outlineColor - default value (see corresponding attribute among the dataSet attributes)
randomness - default value (see corresponding attribute among the dataSet attributes)
circleSize - default value (see corresponding attribute among the dataSet attributes)
content - an array reference or string containing the data for this data set. If it's a string, comma is the default separator, but this can
be changed with the separator attribute
description - explanatory text for this data set - will be displayed below the graph
separator [/,\s*/] - If the content/dataSet isn't an array reference, but a string, then o2 needs to know where one value ends and the next one begins.
The default separator is a comma followed by zero or more spaces.
textSize [10] - font size of the description text (in pixels)
color - color of the bars or lines in this dataset
links - an array reference or a comma-separated string of links, one per value in the data set. In theory it should work with all types of graphs, but
in practice, it doesn't seem to work with Scatter or Area.
Line, Scatter, Area, HighLowClose, Candle, LineWithDots:
width - the width of the line
LineWithDots:
solidDots [1] - if the dots should be solid or hollow
Bar, OutlinedBar, 3DBar, GlassBar, FadeBar, SketchBar, Area, HighLowClose, Candle:
opacity [80] - how non-transparent the graph is (When the mouse is moved over, the graph becomes fully opaque)
Area, LineWithDots:
dotSize [5] - radius of dots in pixels
Scatter:
circleSize - Radius of the circles (all the circles will get the same size)
OutlinedBar:
outlineColor [black] - color of the border of the OutlinedBar
SketchBar:
randomness [3] - how much the bars should deviate from perfectly drawn bars


There are two applications you must complete before the deadline to be admitted to the program. You need to apply both to the university as a whole and also to the graduate program.
For more information, check this page HERE.
Complete and submit at HTTPS://WWW2.CALSTATE.EDU/APPLY/GRADUATE
Complete the department application by filling out the following form:


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