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Browse files- .gitattributes +4 -0
- utils/example1.jpg +3 -0
- utils/example2.jpg +3 -0
- utils/example3.png +3 -0
- utils/example4.jpg +3 -0
- utils/utils.py +103 -0
- weights/weights.pt +3 -0
.gitattributes
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@@ -33,3 +33,7 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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utils/example1.jpg filter=lfs diff=lfs merge=lfs -text
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utils/example2.jpg filter=lfs diff=lfs merge=lfs -text
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utils/example3.png filter=lfs diff=lfs merge=lfs -text
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utils/example4.jpg filter=lfs diff=lfs merge=lfs -text
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utils/example1.jpg
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Git LFS Details
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utils/example2.jpg
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Git LFS Details
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utils/example3.png
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Git LFS Details
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utils/example4.jpg
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Git LFS Details
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utils/utils.py
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import numpy as np
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import scipy.sparse as sp
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import torch
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def scipy_to_torch_sparse(scp_matrix):
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values = scp_matrix.data
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indices = np.vstack((scp_matrix.row, scp_matrix.col))
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i = torch.LongTensor(indices)
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v = torch.FloatTensor(values)
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shape = scp_matrix.shape
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sparse_tensor = torch.sparse.FloatTensor(i, v, torch.Size(shape))
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return sparse_tensor
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## Adjacency Matrix
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def mOrgan(N):
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sub = np.zeros([N, N])
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for i in range(0, N):
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sub[i, i-1] = 1
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sub[i, (i+1)%N] = 1
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return sub
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## Downsampling Matrix
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def mOrganD(N):
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N2 = int(np.ceil(N/2))
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sub = np.zeros([N2, N])
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for i in range(0, N2):
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if (2*i+1) == N:
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sub[i, 2*i] = 1
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else:
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sub[i, 2*i] = 1/2
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sub[i, 2*i+1] = 1/2
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return sub
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def mOrganU(N):
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N2 = int(np.ceil(N/2))
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sub = np.zeros([N, N2])
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for i in range(0, N):
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if i % 2 == 0:
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sub[i, i//2] = 1
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else:
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sub[i, i//2] = 1/2
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sub[i, (i//2 + 1) % N2] = 1/2
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return sub
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def genMatrixesLungsHeart():
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RLUNG = 44
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LLUNG = 50
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HEART = 26
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Asub1 = mOrgan(RLUNG)
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Asub2 = mOrgan(LLUNG)
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Asub3 = mOrgan(HEART)
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ADsub1 = mOrgan(int(np.ceil(RLUNG / 2)))
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ADsub2 = mOrgan(int(np.ceil(LLUNG / 2)))
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ADsub3 = mOrgan(int(np.ceil(HEART / 2)))
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Dsub1 = mOrganD(RLUNG)
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Dsub2 = mOrganD(LLUNG)
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Dsub3 = mOrganD(HEART)
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Usub1 = mOrganU(RLUNG)
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Usub2 = mOrganU(LLUNG)
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Usub3 = mOrganU(HEART)
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p1 = RLUNG
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p2 = p1 + LLUNG
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p3 = p2 + HEART
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p1_ = int(np.ceil(RLUNG / 2))
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p2_ = p1_ + int(np.ceil(LLUNG / 2))
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p3_ = p2_ + int(np.ceil(HEART / 2))
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A = np.zeros([p3, p3])
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A[:p1, :p1] = Asub1
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A[p1:p2, p1:p2] = Asub2
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A[p2:p3, p2:p3] = Asub3
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AD = np.zeros([p3_, p3_])
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AD[:p1_, :p1_] = ADsub1
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AD[p1_:p2_, p1_:p2_] = ADsub2
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AD[p2_:p3_, p2_:p3_] = ADsub3
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D = np.zeros([p3_, p3])
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D[:p1_, :p1] = Dsub1
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D[p1_:p2_, p1:p2] = Dsub2
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D[p2_:p3_, p2:p3] = Dsub3
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U = np.zeros([p3, p3_])
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U[:p1, :p1_] = Usub1
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U[p1:p2, p1_:p2_] = Usub2
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U[p2:p3, p2_:p3_] = Usub3
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return A, AD, D, U
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weights/weights.pt
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@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:b76bbb8c8ad9774cdf3ac81c9edf04bcc800b3c7f7eacf24ce7249038f3c640f
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size 70083051
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