task stringclasses 3
values | instruction stringclasses 6
values | input stringlengths 318 2.22k | output stringlengths 49 891 | meta unknown |
|---|---|---|---|---|
<TASK:RERANK> | <TASK:RERANK> Score candidate passage relevance on 0-3 and return JSON with label and rationale. | QUERY: A deficiency of vitamin B6 decreases blood levels of homocysteine.
CANDIDATE_PASSAGE:
Randomized trial of folic acid supplementation and serum homocysteine levels. BACKGROUND Lowering serum homocysteine levels with folic acid is expected to reduce mortality from ischemic heart disease. Homocysteine reduction is... | {"label": 3, "rationale": "The passage directly answers or verifies the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "37",
"doc_id": "11705328",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Assign relevance class 0,1,2,3 for query-passage matching and return JSON label and rationale. | QUERY: Splenomegaly is observed in knockin mouse lacking the SHP-2 MAPK pathway.
CANDIDATE_PASSAGE:
Cyclin-dependent kinase 2 is essential for meiosis but not for mitotic cell division in mice We targeted the locus encoding the cyclin-dependent kinase 2 (CDK2) by homologous recombination in mouse embryonic stem (ES) c... | {"label": 1, "rationale": "The passage is loosely related but does not directly answer the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "1097",
"doc_id": "19522248",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:QA> | <TASK:QA> Determine whether the abstract supports a yes/no/maybe answer. Return JSON label and rationale. | QUESTION: Does solid culture for tuberculosis influence clinical decision making in India?
ABSTRACT:
Medical units at an academic tertiary referral hospital in Southern India. To investigate the impact of solid culture on Löwenstein-Jensen medium on clinical decision making. In a retrospective review of 150 culture-po... | {"label": "maybe", "rationale": "Using solid culture, 150 cultures need to be tested for one treatment modification and 30 for DST. The cost of the widespread application of culture will need to be balanced against its impact on treatment decisions in India."} | {
"source_dataset": "PubMedQA",
"source_split": "pqa_labeled",
"task_name": "qa",
"pubid": 21756515,
"truncated": false,
"label_space": [
"yes",
"no",
"maybe"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Decide SUPPORTS, REFUTES, or NEI using only the candidate abstract. Return JSON label and rationale. | CLAIM: Individuals with low serum vitamin D concentrations have decreased risk of multiple sclerosis.
CANDIDATE_ABSTRACT:
TITLE: Past exposure to sun, skin phenotype, and risk of multiple sclerosis: case-control study.
ABSTRACT: OBJECTIVE To examine whether past high sun exposure is associated with a reduced risk of m... | {"label": "NEI", "rationale": "The abstract does not contain direct evidence to support or refute the claim."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 622,
"doc_id": "17000834",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Assign relevance class 0,1,2,3 for query-passage matching and return JSON label and rationale. | QUERY: Female carriers of the Apolipoprotein E4 (APOE4) allele have increased risk for Alzheimer's disease.
CANDIDATE_PASSAGE:
Mitotic chromosomes fold by condensin-dependent helical winding of chromatin loop arrays During mitosis, chromosomes fold into compacted rod shaped structures. We combined imaging and Hi-C of ... | {"label": 0, "rationale": "The passage is irrelevant to the query intent."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "414",
"doc_id": "90064424",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Classify the claim against the candidate abstract. Return JSON with keys label and rationale. | CLAIM: Scapular stabilizer exercises are more effective than general exercise therapy in reducing pain and improving function of the shoulder.
CANDIDATE_ABSTRACT:
TITLE: Effect of specific exercise strategy on need for surgery in patients with subacromial impingement syndrome: randomised controlled study
ABSTRACT: OBJ... | {"label": "SUPPORTS", "rationale": "Evidence snippet: \"Significantly more patients in the specific exercise group reported successful outcome (defined as large improvement or recovered) in the patients' global assessment of change because of treatment: 69% (35/51) v 24% (11/46); odds ratio 7.6, 3.1 to 18.9; P<0.001.\"... | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 1069,
"doc_id": "4200695",
"truncated": true,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Assign relevance class 0,1,2,3 for query-passage matching and return JSON label and rationale. | QUERY: Integrating classroom-based collaborative learning with Web-based collaborative learning leads to subpar class performance
CANDIDATE_PASSAGE:
Computer assisted learning in undergraduate medical education. It is becoming “a truth universally acknowledged” that the education of undergraduate medical students will... | {"label": 3, "rationale": "The passage directly answers or verifies the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "649",
"doc_id": "12789595",
"truncated": true,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Classify the claim against the candidate abstract. Return JSON with keys label and rationale. | CLAIM: Microglia are an innate immune cell type of the peripheral nervous system.
CANDIDATE_ABSTRACT:
TITLE: Multifunctional in vivo vascular imaging using near-infrared II fluorescence
ABSTRACT: In vivo real-time epifluorescence imaging of mouse hind limb vasculatures in the second near-infrared region (NIR-II) is pe... | {"label": "NEI", "rationale": "The abstract does not contain direct evidence to support or refute the claim."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 790,
"doc_id": "2056197",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Assign relevance class 0,1,2,3 for query-passage matching and return JSON label and rationale. | QUERY: Mice that lack Interferon-γ or its receptor are highly susceptible to experimental autoimmune myocarditis.
CANDIDATE_PASSAGE:
Gene regulation in the immune system by long noncoding RNAs Long noncoding RNAs (lncRNAs) are emerging as critical regulators of gene expression in the immune system. Studies have shown ... | {"label": 1, "rationale": "The passage is loosely related but does not directly answer the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "780",
"doc_id": "5519177",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Assign relevance class 0,1,2,3 for query-passage matching and return JSON label and rationale. | QUERY: LSD1-positive promoters are associated with RNA polymerase II
CANDIDATE_PASSAGE:
Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences. Although phylogenetic inference of protein-coding sequences continues to dominate the literature, few analyses incorporate evolutio... | {"label": 2, "rationale": "The passage provides closely relevant background for the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "679",
"doc_id": "18027063",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Score candidate passage relevance on 0-3 and return JSON with label and rationale. | QUERY: Obesity decreases life quality.
CANDIDATE_PASSAGE:
CD4+CD25+Foxp3+Regulatory T Cells Protect Endothelial Function Impaired by Oxidized Low Density Lipoprotein via the KLF-2 Transcription Factor Objective: To investigate the regulation of CD4+CD25+ Regulatory T cells (Tregs) on pro-inflammatory adhesion molecule... | {"label": 0, "rationale": "The passage is irrelevant to the query intent."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "871",
"doc_id": "30908508",
"truncated": true,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Classify the claim against the candidate abstract. Return JSON with keys label and rationale. | CLAIM: Natriuretic peptides increase susceptibility to diabetes.
CANDIDATE_ABSTRACT:
TITLE: Mendelian Randomization Study of B-Type Natriuretic Peptide and Type 2 Diabetes: Evidence of Causal Association from Population Studies
ABSTRACT: BACKGROUND Genetic and epidemiological evidence suggests an inverse association b... | {"label": "REFUTES", "rationale": "Evidence snippet: \"In participants of our case-cohort study who were free of T2D and cardiovascular disease at baseline, we observed a 21% (95% CI 3%-36%) decreased risk of incident T2D per one standard deviation (SD) higher log-transformed NT-pro-BNP levels in analysis adjusted for ... | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 840,
"doc_id": "15663829",
"truncated": true,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Score candidate passage relevance on 0-3 and return JSON with label and rationale. | QUERY: Mice that lack Interferon-γ or its receptor are highly susceptible to experimental autoimmune myocarditis.
CANDIDATE_PASSAGE:
the Development of Autoimmune Myocarditis in Mice by an BACKGROUND Interleukin (IL)-12 exerts a potent proinflammatory effect by stimulating T-helper (Th) 1 responses. This effect is bel... | {"label": 3, "rationale": "The passage directly answers or verifies the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "780",
"doc_id": "8246922",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Decide SUPPORTS, REFUTES, or NEI using only the candidate abstract. Return JSON label and rationale. | CLAIM: Intra-cerebroventricular infusion of amyloid-β oligomers reduces expression of fibronectin type-III domain-containing protein 5 mRNA in mice hippocampi.
CANDIDATE_ABSTRACT:
TITLE: Exercise-linked FNDC5/irisin rescues synaptic plasticity and memory defects in Alzheimer’s models
ABSTRACT: Defective brain hormonal... | {"label": "NEI", "rationale": "The abstract does not contain direct evidence to support or refute the claim."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 655,
"doc_id": "57574395",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Classify the claim against the candidate abstract. Return JSON with keys label and rationale. | CLAIM: The RANK-RANK-Ligand (RANKL) pathway is involved in the development of Aire-expressing medullary thymic epithelial cells (mTECs).
CANDIDATE_ABSTRACT:
TITLE: Rank Signaling Links the Development of Invariant γδ T Cell Progenitors and Aire+ Medullary Epithelium
ABSTRACT: The thymic medulla provides a specialized ... | {"label": "SUPPORTS", "rationale": "Evidence snippet: \"Here we showed that emergence of the first cohorts of Aire(+) mTECs at this key developmental stage, prior to αβ T cell repertoire selection, was jointly directed by Rankl(+) lymphoid tissue inducer cells and invariant Vγ5(+) dendritic epidermal T cell (DETC) prog... | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 1181,
"doc_id": "301838",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Decide SUPPORTS, REFUTES, or NEI using only the candidate abstract. Return JSON label and rationale. | CLAIM: Macrolides have no protective effect against myocardial infarction.
CANDIDATE_ABSTRACT:
TITLE: An Excitatory Loop with Astrocytes Contributes to Drive Neurons to Seizure Threshold
ABSTRACT: Seizures in focal epilepsies are sustained by a highly synchronous neuronal discharge that arises at restricted brain site... | {"label": "NEI", "rationale": "The abstract does not contain direct evidence to support or refute the claim."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 742,
"doc_id": "1410197",
"truncated": true,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Score candidate passage relevance on 0-3 and return JSON with label and rationale. | QUERY: Inhibiting focal adhesion formation increases the rate at which cells convert mechanical strain into inflammation and fibrosis.
CANDIDATE_PASSAGE:
Focal adhesion kinase links mechanical force to skin fibrosis via inflammatory signaling Exuberant fibroproliferation is a common complication after injury for reaso... | {"label": 3, "rationale": "The passage directly answers or verifies the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "633",
"doc_id": "5172048",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:QA> | <TASK:QA> Answer with yes, no, or maybe from the abstract, then provide a short rationale. Return JSON label and rationale. | QUESTION: Is prophylactic fixation a cost-effective method to prevent a future contralateral fragility hip fracture?
ABSTRACT:
: A previous hip fracture more than doubles the risk of a contralateral hip fracture. Pharmacologic and environmental interventions to prevent hip fracture have documented poor compliance. The... | {"label": "maybe", "rationale": ": Prophylactic fixation with a cephalomedullary nail was not found to be cost-effective for the average older woman who sustained a hip fracture. However, it may be appropriate for select patient populations. The study supports the need for basic science and clinical trials investigatin... | {
"source_dataset": "PubMedQA",
"source_split": "pqa_labeled",
"task_name": "qa",
"pubid": 20101129,
"truncated": true,
"label_space": [
"yes",
"no",
"maybe"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Classify the claim against the candidate abstract. Return JSON with keys label and rationale. | CLAIM: LRBA prevents CTLA - 4 recycling.
CANDIDATE_ABSTRACT:
TITLE: Autosomal dominant immune dysregulation syndrome in humans with CTLA4 mutations
ABSTRACT: The protein cytotoxic T lymphocyte antigen-4 (CTLA-4) is an essential negative regulator of immune responses, and its loss causes fatal autoimmunity in mice. We ... | {"label": "NEI", "rationale": "The abstract does not contain direct evidence to support or refute the claim."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 676,
"doc_id": "857189",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:QA> | <TASK:QA> Determine whether the abstract supports a yes/no/maybe answer. Return JSON label and rationale. | QUESTION: Is sentinel lymph node biopsy accurate in predicting lymph node status for patients with cervical carcinoma?
ABSTRACT:
The authors evaluated the accuracy of sentinel lymph node biopsy in predicting lymph node status for patients with early cervical carcinoma. In particular, the authors set out to determine t... | {"label": "no", "rationale": "Multilevel sectioning followed by cytokeratin immunohistochemistry may identify additional patients who have lymph node micrometastases; in the current study, this technique identified cases in which micrometastases were present in nonsentinel lymph nodes even when sentinel lymph nodes wer... | {
"source_dataset": "PubMedQA",
"source_split": "pqa_artificial",
"task_name": "qa",
"pubid": 15139058,
"truncated": false,
"label_space": [
"yes",
"no",
"maybe"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Score candidate passage relevance on 0-3 and return JSON with label and rationale. | QUERY: GATA-3 is important for hematopoietic stem cell (HSC) function.
CANDIDATE_PASSAGE:
FOXO4 is necessary for neural differentiation of human embryonic stem cells. Proteostasis is critical for maintaining cell function and proteome stability may play an important role in human embryonic stem cell (hESC) immortality... | {"label": 2, "rationale": "The passage provides closely relevant background for the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "443",
"doc_id": "1447990",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Assign relevance class 0,1,2,3 for query-passage matching and return JSON label and rationale. | QUERY: The risk of breast cancer among parous women increases with placental weight of pregnancies, and this association is strongest for premenopausal breast cancer.
CANDIDATE_PASSAGE:
Pregnancy characteristics and maternal risk of breast cancer. CONTEXT During pregnancy, serum levels of estrogen, progesterone, and o... | {"label": 3, "rationale": "The passage directly answers or verifies the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "1266",
"doc_id": "37480103",
"truncated": true,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Assign relevance class 0,1,2,3 for query-passage matching and return JSON label and rationale. | QUERY: Pyridostatin stabilizes the G - quadruplex in the telomeric region.
CANDIDATE_PASSAGE:
Functional proteomics identifies miRNAs to target a p27/Myc/phospho-Rb signature in breast and ovarian cancer The myc oncogene is overexpressed in almost half of all breast and ovarian cancers, but attempts at therapeutic int... | {"label": 1, "rationale": "The passage is loosely related but does not directly answer the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "1000",
"doc_id": "19358586",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Assign relevance class 0,1,2,3 for query-passage matching and return JSON label and rationale. | QUERY: miRNAs regulate a unique suite of mRNAs to maintain homeostasis in cells.
CANDIDATE_PASSAGE:
Wortmannin, a phosphoinositide 3-kinase inhibitor, selectively enhances cytotoxicity of receptor-directed-toxin chimeras in vitro and in vivo. BACKGROUND Generalized resistance of some neoplastic cell lines to treatment... | {"label": 0, "rationale": "The passage is irrelevant to the query intent."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "1394",
"doc_id": "3078550",
"truncated": true,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Assign relevance class 0,1,2,3 for query-passage matching and return JSON label and rationale. | QUERY: Chronic aerobic exercise alters endothelial function, improving vasodilating mechanisms mediated by NO.
CANDIDATE_PASSAGE:
Glycolytic oligodendrocytes maintain myelin and long-term axonal integrity Oligodendrocytes, the myelin-forming glial cells of the central nervous system, maintain long-term axonal integrit... | {"label": 1, "rationale": "The passage is loosely related but does not directly answer the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "261",
"doc_id": "2601324",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Assign relevance class 0,1,2,3 for query-passage matching and return JSON label and rationale. | QUERY: Leuko-reduced blood reduces infectious complications in red blood cell transfusion.
CANDIDATE_PASSAGE:
Development of leukemia in donor cells after allogeneic stem cell transplantation--a survey of the European Group for Blood and Marrow Transplantation (EBMT). Leukemia in donor cells (donor cell leukemia; DCL)... | {"label": 1, "rationale": "The passage is loosely related but does not directly answer the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "693",
"doc_id": "11344428",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Classify the claim against the candidate abstract. Return JSON with keys label and rationale. | CLAIM: Excess gestational weight gain is associated with obesity-related pregnancy outcomes.
CANDIDATE_ABSTRACT:
TITLE: Effects of interventions in pregnancy on maternal weight and obstetric outcomes: meta-analysis of randomised evidence
ABSTRACT: OBJECTIVE To evaluate the effects of dietary and lifestyle intervention... | {"label": "SUPPORTS", "rationale": "Evidence snippet: \"Among the interventions, those based on diet are the most effective and are associated with reductions in maternal gestational weight gain and improved obstetric outcomes.\". The claim is supports by this abstract."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 394,
"doc_id": "11360768",
"truncated": true,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Score candidate passage relevance on 0-3 and return JSON with label and rationale. | QUERY: Combining phosphatidylinositide 3-kinase and MEK 1/2 inhibitors is effective at treating KRAS mutant tumors.
CANDIDATE_PASSAGE:
Acquired EGFR C797S mutation mediates resistance to AZD9291 in non–small cell lung cancer harboring EGFR T790M Here we studied cell-free plasma DNA (cfDNA) collected from subjects with... | {"label": 2, "rationale": "The passage provides closely relevant background for the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "275",
"doc_id": "9505402",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:QA> | <TASK:QA> Determine whether the abstract supports a yes/no/maybe answer. Return JSON label and rationale. | QUESTION: Does population screening for coronary artery calcification increase mental distress and the use of psychoactive medication?
ABSTRACT:
Detection of coronary artery calcification (CAC) has been proposed for population screening. It remains unknown whether such a strategy would result in unnecessary concern am... | {"label": "no", "rationale": "A population screening program including CAC score appears to have no detrimental impact on mental distress and does not increase the use of psychoactive medication."} | {
"source_dataset": "PubMedQA",
"source_split": "pqa_artificial",
"task_name": "qa",
"pubid": 22336666,
"truncated": false,
"label_space": [
"yes",
"no",
"maybe"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Decide SUPPORTS, REFUTES, or NEI using only the candidate abstract. Return JSON label and rationale. | CLAIM: Basophils counteract disease development in patients with systemic lupus erythematosus (SLE).
CANDIDATE_ABSTRACT:
TITLE: BASOPHILS AND THE T HELPER 2 ENVIRONMENT CAN PROMOTE THE DEVELOPMENT OF LUPUS NEPHRITIS
ABSTRACT: In systemic lupus erythematosus (SLE), self-reactive antibodies can target the kidney (lupus ... | {"label": "REFUTES", "rationale": "Evidence snippet: \"Individuals with SLE also have elevated serum IgE, self-reactive IgEs and activated basophils that express CD62 ligand (CD62L) and the major histocompatibility complex (MHC) class II molecule human leukocyte antigen-DR (HLA-DR), parameters that are associated with ... | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 171,
"doc_id": "12670680",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Assign relevance class 0,1,2,3 for query-passage matching and return JSON label and rationale. | QUERY: The NF-κB essential modulator gene prevents intestinal inflammation by inhibiting receptor-interacting protein (RIP) kinase 1 kinase activity-mediated epithelial cell death.
CANDIDATE_PASSAGE:
Ibuprofen for the treatment of patent ductus arteriosus in preterm or low birth weight (or both) infants. BACKGROUND In... | {"label": 0, "rationale": "The passage is irrelevant to the query intent."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "1171",
"doc_id": "34544514",
"truncated": true,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Assign relevance class 0,1,2,3 for query-passage matching and return JSON label and rationale. | QUERY: Gpr124 increases BBB breakdown in mouse models of ischemic stroke.
CANDIDATE_PASSAGE:
VEGF inhibits tumor cell invasion and mesenchymal transition through a MET/VEGFR2 complex. Inhibition of VEGF signaling leads to a proinvasive phenotype in mouse models of glioblastoma multiforme (GBM) and in a subset of GBM p... | {"label": 2, "rationale": "The passage provides closely relevant background for the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "479",
"doc_id": "13235609",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Score candidate passage relevance on 0-3 and return JSON with label and rationale. | QUERY: Epidemiological disease burden from noncommunicable diseases is more prevalent in low economic settings.
CANDIDATE_PASSAGE:
TGF-β and Insulin Signaling Regulate Reproductive Aging via Oocyte and Germline Quality Maintenance Reproductive cessation is perhaps the earliest aging phenotype that humans experience. S... | {"label": 0, "rationale": "The passage is irrelevant to the query intent."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "384",
"doc_id": "18949516",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Decide SUPPORTS, REFUTES, or NEI using only the candidate abstract. Return JSON label and rationale. | CLAIM: Charcoal shows no benefit for acute paraquat poisoning.
CANDIDATE_ABSTRACT:
TITLE: Effect of activated charcoal hemoperfusion on renal function in patients with paraquat poisoning.
ABSTRACT: The present study retrospectively analyzed 19 patients diagnosed with paraquat (PQ) poisoning with the aim to investigate... | {"label": "SUPPORTS", "rationale": "Evidence snippet: \"Activated charcoal hemoperfusion had little effect on avoiding acute kidney injury in patients with severe PQ poisoning.\". The claim is supports by this abstract."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 246,
"doc_id": "3430789",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Classify the claim against the candidate abstract. Return JSON with keys label and rationale. | CLAIM: Human embryonic stem cells give rise to cell types from the outer embryonic germ layer, but not the other two layers.
CANDIDATE_ABSTRACT:
TITLE: Evidence of a pluripotent human embryonic stem cell line derived from a cloned blastocyst.
ABSTRACT: Somatic cell nuclear transfer (SCNT) technology has recently been ... | {"label": "REFUTES", "rationale": "Evidence snippet: \"The SCNT-hES-1 cells displayed typical ES cell morphology and cell surface markers and were capable of differentiating into embryoid bodies in vitro and of forming teratomas in vivo containing cell derivatives from all three embryonic germ layers in severe combined... | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 530,
"doc_id": "10546779",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Score candidate passage relevance on 0-3 and return JSON with label and rationale. | QUERY: Commelina yellow mottle virus (ComYMV) has three typical badnavirus ORFs, capable of encoding proteins 23, 15, and 216 kD.
CANDIDATE_PASSAGE:
Properties of Commelina yellow mottle virus's complete DNA sequence, genomic discontinuities and transcript suggest that it is a pararetrovirus. The non-enveloped bacilli... | {"label": 3, "rationale": "The passage directly answers or verifies the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "277",
"doc_id": "14376683",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Decide SUPPORTS, REFUTES, or NEI using only the candidate abstract. Return JSON label and rationale. | CLAIM: Forkhead 0 (fox0) transcription factors are involved in apoptosis.
CANDIDATE_ABSTRACT:
TITLE: Cell Stem Cell Review FoxO Transcription Factors and Stem Cell Homeostasis: Insights from the Hematopoietic System
ABSTRACT: The forkhead O (FoxO) family of transcription factors participates in diverse physiologic pro... | {"label": "SUPPORTS", "rationale": "Evidence snippet: \"The forkhead O (FoxO) family of transcription factors participates in diverse physiologic processes, including induction of cell-cycle arrest, stress resistance, differentiation, apoptosis, and metabolism.\". The claim is supports by this abstract."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 426,
"doc_id": "16728949",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Classify the claim against the candidate abstract. Return JSON with keys label and rationale. | CLAIM: Early patent ductus ateriosus (PDA) screening increases in-hospital mortality.
CANDIDATE_ABSTRACT:
TITLE: Variants at 6q21 implicate PRDM1 in the etiology of therapy-induced second malignancies after Hodgkin's lymphoma
ABSTRACT: Survivors of pediatric Hodgkin's lymphoma are at risk for radiation therapy–induced... | {"label": "NEI", "rationale": "The abstract does not contain direct evidence to support or refute the claim."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 368,
"doc_id": "1649738",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Classify the claim against the candidate abstract. Return JSON with keys label and rationale. | CLAIM: For every 1,000 children with cerebral palsy, more than 300 of them are premature or underweight at birth.
CANDIDATE_ABSTRACT:
TITLE: Changes in the prevalence of cerebral palsy for children born very prematurely within a population-based program over 30 years.
ABSTRACT: CONTEXT Although cerebral palsy (CP) amo... | {"label": "NEI", "rationale": "The abstract does not contain direct evidence to support or refute the claim."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 425,
"doc_id": "33257464",
"truncated": true,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Assign relevance class 0,1,2,3 for query-passage matching and return JSON label and rationale. | QUERY: CHEK2 is not associated with breast cancer.
CANDIDATE_PASSAGE:
Keeping your senescent cells under control Cellular senescence is a stable form of cell-cycle arrest which is thought to limit the proliferative potential of premalignant cells [1]. The senescence phenotype was initially described by Hayflick and Mo... | {"label": 2, "rationale": "The passage provides closely relevant background for the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "208",
"doc_id": "15521377",
"truncated": true,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:QA> | <TASK:QA> Answer with yes, no, or maybe from the abstract, then provide a short rationale. Return JSON label and rationale. | QUESTION: Can calprotectin predict relapse risk in inflammatory bowel disease?
ABSTRACT:
Assessing the clinical course of inflammatory bowel disease (IBD) patients consists of periodical clinical evaluations and laboratory tests. We aimed to assess the role of calprotectin tests in predicting clinical relapse in IBD p... | {"label": "maybe", "rationale": "Measuring calprotectin may help to identify UC and colonic CD patients at higher risk of clinical relapse."} | {
"source_dataset": "PubMedQA",
"source_split": "pqa_labeled",
"task_name": "qa",
"pubid": 18802997,
"truncated": false,
"label_space": [
"yes",
"no",
"maybe"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Decide SUPPORTS, REFUTES, or NEI using only the candidate abstract. Return JSON label and rationale. | CLAIM: Cytochrome c is released from the mitochondrial intermembrane space to cytosol during apoptosis.
CANDIDATE_ABSTRACT:
TITLE: At the gates of death.
ABSTRACT: Apoptosis that proceeds via the mitochondrial pathway involves mitochondrial outer membrane permeabilization (MOMP), responsible for the release of cytochr... | {"label": "SUPPORTS", "rationale": "Evidence snippet: \"Apoptosis that proceeds via the mitochondrial pathway involves mitochondrial outer membrane permeabilization (MOMP), responsible for the release of cytochrome c and other proteins of the mitochondrial intermembrane space.\". The claim is supports by this abstract.... | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 298,
"doc_id": "39381118",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Classify the claim against the candidate abstract. Return JSON with keys label and rationale. | CLAIM: Human embryonic stem cells give rise to cell types from all three embryonic germ layers.
CANDIDATE_ABSTRACT:
TITLE: Establishment and in vitro differentiation of a new embryonic stem cell line from human blastocyst.
ABSTRACT: Embryonic stem cells have the ability to remain undifferentiated and proliferate indef... | {"label": "SUPPORTS", "rationale": "Evidence snippet: \"Embryonic stem cells have the ability to remain undifferentiated and proliferate indefinitely in vitro while maintaining the potential to differentiate into derivatives of all three embryonic germ layers.\". The claim is supports by this abstract."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 529,
"doc_id": "36651210",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Score candidate passage relevance on 0-3 and return JSON with label and rationale. | QUERY: Inhibiting focal adhesion formation increases the rate at which cells convert mechanical strain into inflammation and fibrosis.
CANDIDATE_PASSAGE:
Fingolimod provides long-term protection in rodent models of cerebral ischemia. OBJECTIVE The sphingosine-1-phosphate (S1P) receptor agonist fingolimod (FTY720), tha... | {"label": 2, "rationale": "The passage provides closely relevant background for the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "633",
"doc_id": "33884866",
"truncated": true,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Decide SUPPORTS, REFUTES, or NEI using only the candidate abstract. Return JSON label and rationale. | CLAIM: Medications to treat obesity have unwanted side effects.
CANDIDATE_ABSTRACT:
TITLE: Colorectal cancer survival in socioeconomic groups in England: variation is mainly in the short term after diagnosis.
ABSTRACT: UNLABELLED The objective of this study was to examine differences in cancer survival between socioec... | {"label": "NEI", "rationale": "The abstract does not contain direct evidence to support or refute the claim."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 766,
"doc_id": "2058909",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Score candidate passage relevance on 0-3 and return JSON with label and rationale. | QUERY: Assembly of invadopodia is triggered by focal generation of phosphatidylinositol-3,4-biphosphate and the activation of the nonreceptor tyrosine kinase Src.
CANDIDATE_PASSAGE:
STING and the innate immune response to nucleic acids in the cytosol Cytosolic detection of pathogen-derived nucleic acids is critical fo... | {"label": 0, "rationale": "The passage is irrelevant to the query intent."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "133",
"doc_id": "7968532",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Assign relevance class 0,1,2,3 for query-passage matching and return JSON label and rationale. | QUERY: NFAT4 activation requires IP3R-mediated Ca2+ mobilization.
CANDIDATE_PASSAGE:
Calcium store sensor stromal-interaction molecule 1-dependent signaling plays an important role in cervical cancer growth, migration, and angiogenesis. Store-operated Ca(2+) entry (SOCE) is the principal Ca(2+) entry mechanism in none... | {"label": 2, "rationale": "The passage provides closely relevant background for the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "832",
"doc_id": "7736860",
"truncated": true,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Assign relevance class 0,1,2,3 for query-passage matching and return JSON label and rationale. | QUERY: Chronic aerobic exercise alters endothelial function, improving vasodilating mechanisms mediated by NO.
CANDIDATE_PASSAGE:
Vasodilator responses of coronary resistance arteries of exercise-trained pigs. BACKGROUND The purpose of this study was to test the hypothesis that vasodilator responses of porcine coronar... | {"label": 3, "rationale": "The passage directly answers or verifies the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "261",
"doc_id": "10697096",
"truncated": true,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:QA> | <TASK:QA> Answer with yes, no, or maybe from the abstract, then provide a short rationale. Return JSON label and rationale. | QUESTION: Do cytochrome P450 oxidoreductase genetic polymorphisms A503V and rs2868177 significantly affect warfarin stable dosage in Han-Chinese patients with mechanical heart valve replacement?
ABSTRACT:
To investigate the influence of cytochrome P450 oxidoreductase (POR) polymorphisms (A503V and rs2868177) on warfar... | {"label": "no", "rationale": "POR polymorphisms (A503V and rs2868177) do not appear to significantly influence WSD in Han-Chinese patients with MHVR."} | {
"source_dataset": "PubMedQA",
"source_split": "pqa_artificial",
"task_name": "qa",
"pubid": 23949431,
"truncated": false,
"label_space": [
"yes",
"no",
"maybe"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Classify the claim against the candidate abstract. Return JSON with keys label and rationale. | CLAIM: Differentiation of progenitor cells to myeloid cells is skewed upon activation of insulin signaling.
CANDIDATE_ABSTRACT:
TITLE: Direct sensing of systemic and nutritional signals by hematopoietic progenitors in Drosophila
ABSTRACT: The Drosophila lymph gland is a haematopoietic organ in which progenitor cells, ... | {"label": "REFUTES", "rationale": "Evidence snippet: \"Here, we show that the haematopoietic progenitors of Drosophila are direct targets of systemic (insulin) and nutritional (essential amino acid) signals, and that these systemic signals maintain the progenitors by promoting Wingless (WNT in mammals) signalling.\". T... | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 346,
"doc_id": "11902109",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Assign relevance class 0,1,2,3 for query-passage matching and return JSON label and rationale. | QUERY: De novo assembly of sequence data has fewer specific contigs than unassembled sequence data.
CANDIDATE_PASSAGE:
Identification of T6SS-dependent effector and immunity proteins by Tn-seq in Vibrio cholerae. Type VI protein secretion system (T6SS) is important for bacterial competition through contact-dependent k... | {"label": 1, "rationale": "The passage is loosely related but does not directly answer the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "310",
"doc_id": "22632303",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Classify the claim against the candidate abstract. Return JSON with keys label and rationale. | CLAIM: Nonsteroidal antinflammatory drugs are ineffective as cancer treatments.
CANDIDATE_ABSTRACT:
TITLE: Association of aspirin and NSAID use with risk of colorectal cancer according to genetic variants.
ABSTRACT: IMPORTANCE Use of aspirin and other nonsteroidal anti-inflammatory drugs (NSAIDs) is associated with lo... | {"label": "REFUTES", "rationale": "Evidence snippet: \"Regular use was associated with a lower risk of colorectal cancer among individuals with rs16973225-AA genotype (prevalence, 28% vs 38%; OR, 0.66 [95% CI, 0.62-0.71]; P = 1.9 × 10(-30)) but was not associated with risk of colorectal cancer among those with less com... | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 856,
"doc_id": "43334921",
"truncated": true,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Decide SUPPORTS, REFUTES, or NEI using only the candidate abstract. Return JSON label and rationale. | CLAIM: The PRR MDA5 has a central DExD/H RNA helices domain.
CANDIDATE_ABSTRACT:
TITLE: Immune signaling by RIG-I-like receptors.
ABSTRACT: The RIG-I-like receptors (RLRs) RIG-I, MDA5, and LGP2 play a major role in pathogen sensing of RNA virus infection to initiate and modulate antiviral immunity. The RLRs detect vir... | {"label": "NEI", "rationale": "The abstract does not contain direct evidence to support or refute the claim."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 1179,
"doc_id": "31272411",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Classify the claim against the candidate abstract. Return JSON with keys label and rationale. | CLAIM: HAND2 methylation is a key step in early endometrial carcinogenesis.
CANDIDATE_ABSTRACT:
TITLE: Role of DNA Methylation and Epigenetic Silencing of HAND2 in Endometrial Cancer Development
ABSTRACT: BACKGROUND Endometrial cancer incidence is continuing to rise in the wake of the current ageing and obesity epidem... | {"label": "SUPPORTS", "rationale": "Evidence snippet: \"Increased HAND2 methylation was a feature of premalignant endometrial lesions and was seen to parallel a decrease in RNA and protein levels.\". The claim is supports by this abstract."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 488,
"doc_id": "1780819",
"truncated": true,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Assign relevance class 0,1,2,3 for query-passage matching and return JSON label and rationale. | QUERY: Ambulatory blood pressure monitoring is inaccurate at diagnosing hypertension.
CANDIDATE_PASSAGE:
Coordination of p300-mediated chromatin remodeling and TRAP/mediator function through coactivator PGC-1alpha. Transcriptional coactivators showing physical and functional interactions with PPARgamma include the pro... | {"label": 0, "rationale": "The passage is irrelevant to the query intent."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "106",
"doc_id": "43711341",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Score candidate passage relevance on 0-3 and return JSON with label and rationale. | QUERY: Birth-weight is positively associated with breast cancer.
CANDIDATE_PASSAGE:
Vegan proteins may reduce risk of cancer, obesity, and cardiovascular disease by promoting increased glucagon activity. Amino acids modulate the secretion of both insulin and glucagon; the composition of dietary protein therefore has t... | {"label": 2, "rationale": "The passage provides closely relevant background for the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "179",
"doc_id": "6327940",
"truncated": true,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Score candidate passage relevance on 0-3 and return JSON with label and rationale. | QUERY: Human embryonic stem cells give rise to cell types from the outer embryonic germ layer, but not the other two layers.
CANDIDATE_PASSAGE:
Embryonic-like stem cell derived from adult bone marrow: immature morphology, cell surface markers, ultramicrostructure and differentiation into multinucleated fibers in vitro... | {"label": 2, "rationale": "The passage provides closely relevant background for the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "530",
"doc_id": "35811036",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Decide SUPPORTS, REFUTES, or NEI using only the candidate abstract. Return JSON label and rationale. | CLAIM: Patients with microcytosis and higher erythrocyte count are more vulnerable to severe malarial anaemia when infected with Plasmodium falciparum.
CANDIDATE_ABSTRACT:
TITLE: Increased Microerythrocyte Count in Homozygous α+-Thalassaemia Contributes to Protection against Severe Malarial Anaemia
ABSTRACT: BACKGROUN... | {"label": "REFUTES", "rationale": "Evidence snippet: \"Alpha(+)-thalassaemia homozygosity confers considerable protection against severe malaria, including severe malarial anaemia (SMA) (Hb concentration < 50 g/l), but does not influence parasite count.\". The claim is refutes by this abstract."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 928,
"doc_id": "18174210",
"truncated": true,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Classify the claim against the candidate abstract. Return JSON with keys label and rationale. | CLAIM: A high microerythrocyte count raises vulnerability to severe anemia in homozygous alpha (+)- thalassemia trait subjects.
CANDIDATE_ABSTRACT:
TITLE: Increased Microerythrocyte Count in Homozygous α+-Thalassaemia Contributes to Protection against Severe Malarial Anaemia
ABSTRACT: BACKGROUND The heritable haemoglo... | {"label": "REFUTES", "rationale": "Evidence snippet: \"CONCLUSIONS The increased erythrocyte count and microcytosis in children homozygous for alpha(+)-thalassaemia may contribute substantially to their protection against SMA.\". The claim is refutes by this abstract."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 42,
"doc_id": "18174210",
"truncated": true,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Decide SUPPORTS, REFUTES, or NEI using only the candidate abstract. Return JSON label and rationale. | CLAIM: Satellite cell dysfunction is a key factor in sarcopenia development.
CANDIDATE_ABSTRACT:
TITLE: Inducible depletion of satellite cells in adult, sedentary mice impairs muscle regenerative capacity without affecting sarcopenia
ABSTRACT: A key determinant of geriatric frailty is sarcopenia, the age-associated lo... | {"label": "REFUTES", "rationale": "Evidence snippet: \"These results suggest that lifelong reduction of satellite cells neither accelerated nor exacerbated sarcopenia and that satellite cells did not contribute to the maintenance of muscle size or fiber type composition during aging, but that their loss may contribute ... | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 1065,
"doc_id": "20418809",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Classify the claim against the candidate abstract. Return JSON with keys label and rationale. | CLAIM: Taxation of sugar-sweetened beverages reduced the incidence rate of type II diabetes in India.
CANDIDATE_ABSTRACT:
TITLE: Averting Obesity and Type 2 Diabetes in India through Sugar-Sweetened Beverage Taxation: An Economic-Epidemiologic Modeling Study
ABSTRACT: BACKGROUND Taxing sugar-sweetened beverages (SSBs)... | {"label": "SUPPORTS", "rationale": "Evidence snippet: \"The 20% SSB tax was anticipated to reduce overweight and obesity prevalence by 3.0% (95% CI 1.6%-5.9%) and type 2 diabetes incidence by 1.6% (95% CI 1.2%-1.9%) among various Indian subpopulations over the period 2014-2023, if SSB consumption continued to increase ... | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 1145,
"doc_id": "10071552",
"truncated": true,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Score candidate passage relevance on 0-3 and return JSON with label and rationale. | QUERY: Origin gross domestic product(GDP) is negatively related to dengue virus (DENV-1) diffusion in air traffic shipments.
CANDIDATE_PASSAGE:
Population Density, Water Supply, and the Risk of Dengue Fever in Vietnam: Cohort Study and Spatial Analysis BACKGROUND Aedes aegypti, the major vector of dengue viruses, ofte... | {"label": 3, "rationale": "The passage directly answers or verifies the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "890",
"doc_id": "2097256",
"truncated": true,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Classify the claim against the candidate abstract. Return JSON with keys label and rationale. | CLAIM: Alirocumab treatment reduces apo(a) fractional clearance rate.
CANDIDATE_ABSTRACT:
TITLE: Effects of PCSK9 Inhibition With Alirocumab on Lipoprotein Metabolism in Healthy Humans
ABSTRACT: BACKGROUND Alirocumab, a monoclonal antibody to proprotein convertase subtilisin/kexin type 9 (PCSK9), lowers plasma low-den... | {"label": "REFUTES", "rationale": "Evidence snippet: \"CONCLUSIONS Alirocumab decreased LDL-C and LDL-apoB by increasing IDL- and LDL-apoB FCRs and decreasing LDL-apoB PR.\". The claim is refutes by this abstract."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 98,
"doc_id": "6540064",
"truncated": true,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Assign relevance class 0,1,2,3 for query-passage matching and return JSON label and rationale. | QUERY: Energy balance requires hypothalamic glutamate neurotransmission.
CANDIDATE_PASSAGE:
Fasting Activation of AgRP Neurons Requires NMDA Receptors and Involves Spinogenesis and Increased Excitatory Tone AgRP neuron activity drives feeding and weight gain whereas that of nearby POMC neurons does the opposite. Howev... | {"label": 3, "rationale": "The passage directly answers or verifies the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "378",
"doc_id": "10534299",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:QA> | <TASK:QA> Determine whether the abstract supports a yes/no/maybe answer. Return JSON label and rationale. | QUESTION: Is hypertrophy of the posterior longitudinal ligament a prodromal condition to ossification : a cervical myelopathy case report?
ABSTRACT:
A histopathologic examination of a specimen that showed hypertrophy of the posterior longitudinal ligament of the cervical spine. To illustrate the possibility of hypertr... | {"label": "yes", "rationale": "The herniated nucleus pulposus involving endplate cartilage from C4-C5 was limited to the superficial layer, and proliferation of nucleus pulposus-like chondrocytes occurred in the herniated tissue, where they might undergo a change in cell phenotype. The results of the present study supp... | {
"source_dataset": "PubMedQA",
"source_split": "pqa_artificial",
"task_name": "qa",
"pubid": 11148654,
"truncated": true,
"label_space": [
"yes",
"no",
"maybe"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Score candidate passage relevance on 0-3 and return JSON with label and rationale. | QUERY: IgA plasma cells that are specific for transglutaminase 2 accumulate in the duodenal mucosa on commencement of a gluten-free diet.
CANDIDATE_PASSAGE:
High abundance of plasma cells secreting transglutaminase 2–specific IgA autoantibodies with limited somatic hypermutation in celiac disease intestinal lesions Ce... | {"label": 3, "rationale": "The passage directly answers or verifies the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "552",
"doc_id": "1471041",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Classify the claim against the candidate abstract. Return JSON with keys label and rationale. | CLAIM: N348I mutations cause resistance to zidovudine (AZT).
CANDIDATE_ABSTRACT:
TITLE: N348I in the Connection Domain of HIV-1 Reverse Transcriptase Confers Zidovudine and Nevirapine Resistance
ABSTRACT: Background The catalytically active 66-kDa subunit of the human immunodeficiency virus type 1 (HIV-1) reverse tran... | {"label": "SUPPORTS", "rationale": "Evidence snippet: \"Biochemical analyses of recombinant RT containing N348I provide supporting evidence for the role of this mutation in zidovudine and NNRTI resistance and give some insight into the molecular mechanism of resistance.\". The claim is supports by this abstract."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 823,
"doc_id": "15319019",
"truncated": true,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Decide SUPPORTS, REFUTES, or NEI using only the candidate abstract. Return JSON label and rationale. | CLAIM: Primary cervical cytology screening with HPV detection has higher longitudinal sensitivity to detect severe cervical intraepithelial neoplasia than conventional cytology.
CANDIDATE_ABSTRACT:
TITLE: Evidence regarding human papillomavirus testing in secondary prevention of cervical cancer.
ABSTRACT: More than ev... | {"label": "SUPPORTS", "rationale": "Evidence snippet: \"After conservative treatment of cervical pre-cancer, HPV testing picks up more quickly, with higher sensitivity and not lower specificity, residual or recurrent high-grade CIN than follow-up cytology.\". The claim is supports by this abstract."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 973,
"doc_id": "28617573",
"truncated": true,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:QA> | <TASK:QA> Answer with yes, no, or maybe from the abstract, then provide a short rationale. Return JSON label and rationale. | QUESTION: Does [ Genetic analysis reveal misidentification of Mycobacterium lentiflavum as Mycobacterium intracellulare by the COBAS TaqMan MAI test ]?
ABSTRACT:
To evaluate COBAS TaqMan MAI test misidentification of Mycobacterium lentiflavum as Mycobacterium intracellulare. Preliminary comparative analysis identified... | {"label": "yes", "rationale": "In Japan, commercially available nucleic acid probe- and amplification-based tests cannot identify M. lentiflavum. Correct identification, though challenging, is possible using standard cultivation procedures for colony growth."} | {
"source_dataset": "PubMedQA",
"source_split": "pqa_artificial",
"task_name": "qa",
"pubid": 25283011,
"truncated": false,
"label_space": [
"yes",
"no",
"maybe"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Decide SUPPORTS, REFUTES, or NEI using only the candidate abstract. Return JSON label and rationale. | CLAIM: Combining phosphatidylinositide 3-kinase and MEK 1/2 inhibitors is effective at treating KRAS mutant tumors.
CANDIDATE_ABSTRACT:
TITLE: Effective Use of PI3K and MEK Inhibitors to Treat Mutant K-Ras G12D and PIK3CA H1047R Murine Lung Cancers
ABSTRACT: Somatic mutations that activate phosphoinositide 3-kinase (P... | {"label": "SUPPORTS", "rationale": "Evidence snippet: \"These in vivo studies suggest that inhibitors of the PI3K-mTOR pathway may be active in cancers with PIK3CA mutations and, when combined with MEK inhibitors, may effectively treat KRAS mutated lung cancers.\". The claim is supports by this abstract."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 275,
"doc_id": "4961038",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:QA> | <TASK:QA> Answer with yes, no, or maybe from the abstract, then provide a short rationale. Return JSON label and rationale. | QUESTION: Are home sampling kits for sexually transmitted infections acceptable among men who have sex with men?
ABSTRACT:
There is an urgent need to increase opportunistic screening for sexually transmitted infections (STIs) in community settings, particularly for those who are at increased risk including men who hav... | {"label": "maybe", "rationale": "The widespread acceptability of using HSKs for the diagnosis of STIs could have important public health impacts in terms of earlier diagnosis of asymptomatic infections and thus a decrease in the rate of onward transmission. In addition, HSKs could potentially optimize the use of genito... | {
"source_dataset": "PubMedQA",
"source_split": "pqa_labeled",
"task_name": "qa",
"pubid": 19103915,
"truncated": false,
"label_space": [
"yes",
"no",
"maybe"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Decide SUPPORTS, REFUTES, or NEI using only the candidate abstract. Return JSON label and rationale. | CLAIM: In breast cancer, the loss of myoepithelial cells promotes the transition of ductal carcinoma in situ to invasive carcinoma.
CANDIDATE_ABSTRACT:
TITLE: Regulation of in situ to invasive breast carcinoma transition.
ABSTRACT: The transition of ductal carcinoma in situ (DCIS) to invasive carcinoma is a poorly und... | {"label": "SUPPORTS", "rationale": "Evidence snippet: \"Molecular profiles of isolated luminal epithelial and myoepithelial cells identified an intricate interaction network involving TGFbeta, Hedgehog, cell adhesion, and p63 required for myoepithelial cell differentiation, the elimination of which resulted in loss of ... | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 570,
"doc_id": "20333864",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Score candidate passage relevance on 0-3 and return JSON with label and rationale. | QUERY: Forkhead 0 (fox0) transcription factors are involved in apoptosis.
CANDIDATE_PASSAGE:
Cell Stem Cell Review FoxO Transcription Factors and Stem Cell Homeostasis: Insights from the Hematopoietic System The forkhead O (FoxO) family of transcription factors participates in diverse physiologic processes, including ... | {"label": 3, "rationale": "The passage directly answers or verifies the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "426",
"doc_id": "16728949",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Score candidate passage relevance on 0-3 and return JSON with label and rationale. | QUERY: Epigenetic modulating agents (EMAs) modulate antitumor immune response in a cancer model system.
CANDIDATE_PASSAGE:
STAR: ultrafast universal RNA-seq aligner. MOTIVATION Accurate alignment of high-throughput RNA-seq data is a challenging and yet unsolved problem because of the non-contiguous transcript structur... | {"label": 0, "rationale": "The passage is irrelevant to the query intent."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "385",
"doc_id": "11244195",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Decide SUPPORTS, REFUTES, or NEI using only the candidate abstract. Return JSON label and rationale. | CLAIM: CX3CR1 on the Th2 cells promotes airway inflammation.
CANDIDATE_ABSTRACT:
TITLE: CX3CR1 is required for airway inflammation by promoting T helper cell survival and maintenance in inflamed lung
ABSTRACT: Allergic asthma is a T helper type 2 (T(H)2)-dominated disease of the lung. In people with asthma, a fraction... | {"label": "SUPPORTS", "rationale": "Evidence snippet: \"Transfer of WT CD4(+) T cells into CX3CR1-deficient mice restored the cardinal features of asthma, and CX3CR1-blocking reagents prevented airway inflammation in CX3CR1-deficient recipients injected with WT T(H)2 cells.\". The claim is supports by this abstract."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 218,
"doc_id": "21366394",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Score candidate passage relevance on 0-3 and return JSON with label and rationale. | QUERY: DUSP4 increases apoptosis.
CANDIDATE_PASSAGE:
Profiling of residual breast cancers after neoadjuvant chemotherapy identifies DUSP4 deficiency as a mechanism of drug resistance Neoadjuvant chemotherapy (NAC) induces a pathological complete response (pCR) in ∼30% of patients with breast cancer. However, many pati... | {"label": 3, "rationale": "The passage directly answers or verifies the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "309",
"doc_id": "7821634",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Assign relevance class 0,1,2,3 for query-passage matching and return JSON label and rationale. | QUERY: Having a main partner improves HIV outcomes.
CANDIDATE_PASSAGE:
Immune activation and HIV persistence: implications for curative approaches to HIV infection. Despite complete or near-complete suppression of human immunodeficiency virus (HIV) replication with combination antiretroviral therapy, both HIV and chro... | {"label": 1, "rationale": "The passage is loosely related but does not directly answer the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "495",
"doc_id": "44562058",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:QA> | <TASK:QA> Determine whether the abstract supports a yes/no/maybe answer. Return JSON label and rationale. | QUESTION: Do distinct transcriptome profiles differentiate nonsteroidal anti-inflammatory drug-dependent from nonsteroidal anti-inflammatory drug-independent food-induced anaphylaxis?
ABSTRACT:
Lipid transfer protein (LTP), an abundant protein in fruits, vegetables, and nuts, is a common food allergen in Mediterranean... | {"label": "yes", "rationale": "Gene ontology analysis suggests disturbances in gut epithelial homeostasis in both groups with LTP-A, with potential integrity breaches in patients with LTP-A that might explain their distinct inflammatory signatures. Differential regulation in patients with LTP-A and those with NSAID-LTP... | {
"source_dataset": "PubMedQA",
"source_split": "pqa_artificial",
"task_name": "qa",
"pubid": 26194548,
"truncated": false,
"label_space": [
"yes",
"no",
"maybe"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Decide SUPPORTS, REFUTES, or NEI using only the candidate abstract. Return JSON label and rationale. | CLAIM: Risk-adjusted mortality rates are similar in teaching and non-teaching hospitals.
CANDIDATE_ABSTRACT:
TITLE: Patient Outcomes with Teaching Versus Nonteaching Healthcare: A Systematic Review
ABSTRACT: Background Extensive debate exists in the healthcare community over whether outcomes of medical care at teachin... | {"label": "SUPPORTS", "rationale": "Evidence snippet: \"Conclusions The available data are limited by their nonrandomized design, but overall they do not suggest that a healthcare facility's teaching status on its own markedly improves or worsens patient outcomes.\". The claim is supports by this abstract."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 1055,
"doc_id": "13906581",
"truncated": true,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Score candidate passage relevance on 0-3 and return JSON with label and rationale. | QUERY: Healthy volunteers exhibit rapid and transient increase of cellular ATP after being bolus-injected with fructose.
CANDIDATE_PASSAGE:
Transient receptor potential channels as drug targets: from the science of basic research to the art of medicine. The large Trp gene family encodes transient receptor potential (T... | {"label": 0, "rationale": "The passage is irrelevant to the query intent."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "504",
"doc_id": "27077180",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:QA> | <TASK:QA> Determine whether the abstract supports a yes/no/maybe answer. Return JSON label and rationale. | QUESTION: Does rPN2-mediated glycosylation of tetraspanin CD63 regulate breast cancer cell malignancy?
ABSTRACT:
The tetraspanin CD63 is a highly N-glycosylated protein that is known to regulate cancer malignancy. However, the contribution of glycosylation of CD63 to cancer malignancy remains unclear. Previously, we r... | {"label": "yes", "rationale": "These findings describe a novel and important function of RPN2-mediated CD63 glycosylation, which regulates MDR1 localization and cancer malignancy, including drug resistance and invasion."} | {
"source_dataset": "PubMedQA",
"source_split": "pqa_artificial",
"task_name": "qa",
"pubid": 24884960,
"truncated": false,
"label_space": [
"yes",
"no",
"maybe"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Assign relevance class 0,1,2,3 for query-passage matching and return JSON label and rationale. | QUERY: Systemic immunosuppressive (IS) therapy does not enhance the chance of cancer mortality in patients with inflammatory eye disease (IED)
CANDIDATE_PASSAGE:
20-year outcomes following conservative management of clinically localized prostate cancer. CONTEXT The appropriate therapy for men with clinically localized... | {"label": 2, "rationale": "The passage provides closely relevant background for the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "1125",
"doc_id": "24581365",
"truncated": true,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Decide SUPPORTS, REFUTES, or NEI using only the candidate abstract. Return JSON label and rationale. | CLAIM: Energy balance requires hypothalamic glutamate neurotransmission.
CANDIDATE_ABSTRACT:
TITLE: Fasting Activation of AgRP Neurons Requires NMDA Receptors and Involves Spinogenesis and Increased Excitatory Tone
ABSTRACT: AgRP neuron activity drives feeding and weight gain whereas that of nearby POMC neurons does t... | {"label": "SUPPORTS", "rationale": "Evidence snippet: \"Furthermore, AgRP but not POMC neurons have dendritic spines and increased glutamatergic input onto AgRP neurons caused by fasting was paralleled by an increase in spines, suggesting fasting induced synaptogenesis and spinogenesis.\". The claim is supports by this... | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 378,
"doc_id": "10534299",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Score candidate passage relevance on 0-3 and return JSON with label and rationale. | QUERY: Adult tissue-resident macrophages possess a self-renewing capacity.
CANDIDATE_PASSAGE:
Advances in functional and structural mr image analysis and implementation as fsl The techniques available for the interrogation and analysis of neuroimaging data have a large influence in determining the flexibility, sensiti... | {"label": 0, "rationale": "The passage is irrelevant to the query intent."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "88",
"doc_id": "13466517",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Assign relevance class 0,1,2,3 for query-passage matching and return JSON label and rationale. | QUERY: Autologous transplantation of mesenchymal stem cells causes fewer opportunistic infections than induction therapy with anti-interleukin-2 receptor antibodies.
CANDIDATE_PASSAGE:
A role for interleukin-1β in determining the lineage fate of embryonic rat hippocampal neural precursor cells. Neurogenesis occurs in ... | {"label": 2, "rationale": "The passage provides closely relevant background for the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "143",
"doc_id": "23901235",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Assign relevance class 0,1,2,3 for query-passage matching and return JSON label and rationale. | QUERY: Microcin J25 inhibits nucleoside triphosphate (NTP) binding.
CANDIDATE_PASSAGE:
The DNA Methylome of Human Peripheral Blood Mononuclear Cells DNA methylation plays an important role in biological processes in human health and disease. Recent technological advances allow unbiased whole-genome DNA methylation (me... | {"label": 0, "rationale": "The passage is irrelevant to the query intent."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "788",
"doc_id": "18670",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Decide SUPPORTS, REFUTES, or NEI using only the candidate abstract. Return JSON label and rationale. | CLAIM: Fz/PCP-dependent Pk localizes to the anterior membrane of neuroectoderm cells during zebrafish neuralation
CANDIDATE_ABSTRACT:
TITLE: Planar cell polarity signalling couples cell division and morphogenesis during neurulation
ABSTRACT: Environmental and genetic aberrations lead to neural tube closure defects (NT... | {"label": "NEI", "rationale": "The abstract does not contain direct evidence to support or refute the claim."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 439,
"doc_id": "4423559",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Assign relevance class 0,1,2,3 for query-passage matching and return JSON label and rationale. | QUERY: Ectopic expression of Sall4, Nanog, Esrrb, and Lin28 generates induced pluripotent stem cells from mouse embryonic fibroblasts more efficiently than other factor combinations.
CANDIDATE_PASSAGE:
The developmental potential of iPSCs is greatly influenced by reprogramming factor selection. Induced pluripotent ste... | {"label": 3, "rationale": "The passage directly answers or verifies the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "369",
"doc_id": "6826100",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Decide SUPPORTS, REFUTES, or NEI using only the candidate abstract. Return JSON label and rationale. | CLAIM: Birth-weight is negatively associated with breast cancer.
CANDIDATE_ABSTRACT:
TITLE: Birth Size and Breast Cancer Risk: Re-analysis of Individual Participant Data from 32 Studies
ABSTRACT: BACKGROUND Birth size, perhaps a proxy for prenatal environment, might be a correlate of subsequent breast cancer risk, but... | {"label": "REFUTES", "rationale": "Evidence snippet: \"Relative to women who weighed 3.000-3.499 kg, the risk was 0.96 (CI 0.80-1.16) in those who weighed < 2.500 kg, and 1.12 (95% CI 1.00-1.25) in those who weighed > or = 4.000 kg (p for linear trend = 0.001) in birth record data.\". The claim is refutes by this abstr... | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 178,
"doc_id": "16322674",
"truncated": true,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Classify the claim against the candidate abstract. Return JSON with keys label and rationale. | CLAIM: Over half of the gabonese children with Schimmelpenning-Feuerstein-Mims syndrome (SFM) had a plasma lactate of more than 5mmol/L.
CANDIDATE_ABSTRACT:
TITLE: Assessment of Volume Depletion in Children with Malaria
ABSTRACT: Background The degree of volume depletion in severe malaria is currently unknown, althoug... | {"label": "NEI", "rationale": "The abstract does not contain direct evidence to support or refute the claim."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 895,
"doc_id": "18750453",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Classify the claim against the candidate abstract. Return JSON with keys label and rationale. | CLAIM: The most prevalent adverse events to Semaglutide are cardiovascular.
CANDIDATE_ABSTRACT:
TITLE: Multiplex genome engineering using CRISPR/Cas systems.
ABSTRACT: Functional elucidation of causal genetic variants and elements requires precise genome editing technologies. The type II prokaryotic CRISPR (clustered ... | {"label": "NEI", "rationale": "The abstract does not contain direct evidence to support or refute the claim."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 1237,
"doc_id": "461550",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:QA> | <TASK:QA> Answer with yes, no, or maybe from the abstract, then provide a short rationale. Return JSON label and rationale. | QUESTION: Sternal fracture in growing children : A rare and often overlooked fracture?
ABSTRACT:
Sternal fractures in childhood are rare. The aim of the study was to investigate the accident mechanism, the detection of radiological and sonographical criteria and consideration of associated injuries. In the period from... | {"label": "maybe", "rationale": "Isolated sternal fractures in childhood are often due to typical age-related traumatic incidents. Ultrasonography is a useful diagnostic tool for fracture detection and radiography is the method of choice for visualization of the extent of the dislocation."} | {
"source_dataset": "PubMedQA",
"source_split": "pqa_labeled",
"task_name": "qa",
"pubid": 25277731,
"truncated": false,
"label_space": [
"yes",
"no",
"maybe"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Score candidate passage relevance on 0-3 and return JSON with label and rationale. | QUERY: The deregulated and prolonged activation of monocytes has deleterious effects in chronic infectious conditions.
CANDIDATE_PASSAGE:
The myeloid transcription factor KLF2 regulates the host response to polymicrobial infection and endotoxic shock. Precise control of myeloid cell activation is required for optimal ... | {"label": 3, "rationale": "The passage directly answers or verifies the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "1212",
"doc_id": "6493422",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Score candidate passage relevance on 0-3 and return JSON with label and rationale. | QUERY: Pyridostatin destabilizes the G - quadruplex in the telomeric region.
CANDIDATE_PASSAGE:
Expression of a human cytomegalovirus latency-associated homolog of interleukin-10 during the productive phase of infection. The human cytomegalovirus UL111A region is active during both productive and latent phases of infe... | {"label": 1, "rationale": "The passage is loosely related but does not directly answer the query."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "993",
"doc_id": "25141908",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Decide SUPPORTS, REFUTES, or NEI using only the candidate abstract. Return JSON label and rationale. | CLAIM: aPKCz causes tumour enhancement by affecting glutamine metabolism.
CANDIDATE_ABSTRACT:
TITLE: Control of Nutrient Stress-Induced Metabolic Reprogramming by PKCζ in Tumorigenesis
ABSTRACT: Tumor cells have high-energetic and anabolic needs and are known to adapt their metabolism to be able to survive and keep pr... | {"label": "REFUTES", "rationale": "Evidence snippet: \"Taken together, this demonstrates that PKCζ is a critical metabolic tumor suppressor in mouse and human cancer.\". The claim is refutes by this abstract."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 1382,
"doc_id": "17755060",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:VERIFY> | <TASK:VERIFY> Decide SUPPORTS, REFUTES, or NEI using only the candidate abstract. Return JSON label and rationale. | CLAIM: Differentiation of progenitor cells to myeloid cells is skewed upon activation of insulin signaling.
CANDIDATE_ABSTRACT:
TITLE: TECHNICAL ADVANCE Floral dip: a simplified method for Agrobacterium-mediated
ABSTRACT: The Agrobacterium vacuum infiltration method has made it possible to transform Arabidopsis thalia... | {"label": "NEI", "rationale": "The abstract does not contain direct evidence to support or refute the claim."} | {
"source_dataset": "SciFact",
"task_name": "verification",
"claim_id": 346,
"doc_id": "410286",
"truncated": false,
"label_space": [
"SUPPORTS",
"REFUTES",
"NEI"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Score candidate passage relevance on 0-3 and return JSON with label and rationale. | QUERY: Errors in peripheral IV drug administration are most common during bolus administration and multiple-step medicine preparations.
CANDIDATE_PASSAGE:
Inflammasome-induced IL-1β secretion in microglia is characterized by delayed kinetics and is only partially dependent on inflammatory caspases. Inflammasomes are m... | {"label": 0, "rationale": "The passage is irrelevant to the query intent."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "386",
"doc_id": "16863359",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:QA> | <TASK:QA> Answer with yes, no, or maybe from the abstract, then provide a short rationale. Return JSON label and rationale. | QUESTION: Are there mental health differences between francophone and non-francophone populations in manitoba?
ABSTRACT:
Francophones may experience poorer health due to social status, cultural differences in lifestyle and attitudes, and language barriers to health care. Our study sought to compare mental health indic... | {"label": "maybe", "rationale": "The discrepancy in how Francophones view their mental health and their rates of diagnosed mental disorders may be related to health seeking behaviours in the Francophone population. Community and government agencies should try to improve the mental health of this population through ment... | {
"source_dataset": "PubMedQA",
"source_split": "pqa_labeled",
"task_name": "qa",
"pubid": 25007420,
"truncated": false,
"label_space": [
"yes",
"no",
"maybe"
],
"output_schema": {
"label": "string",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Assign relevance class 0,1,2,3 for query-passage matching and return JSON label and rationale. | QUERY: Ethanol stress increases the expression of PSP in bacteria.
CANDIDATE_PASSAGE:
Matrix Remodeling Promotes Pulmonary Hypertension through Feedback Mechanoactivation of the YAP/TAZ-miR-130/301 Circuit. Pulmonary hypertension (PH) is a deadly vascular disease with enigmatic molecular origins. We found that vascula... | {"label": 0, "rationale": "The passage is irrelevant to the query intent."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "390",
"doc_id": "1727042",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
<TASK:RERANK> | <TASK:RERANK> Score candidate passage relevance on 0-3 and return JSON with label and rationale. | QUERY: Birth-weight is positively associated with breast cancer.
CANDIDATE_PASSAGE:
Crystal structure and association behaviour of the GluR2 amino-terminal domain. Fast excitatory neurotransmission is mediated largely by ionotropic glutamate receptors (iGluRs), tetrameric, ligand-gated ion channel proteins comprised o... | {"label": 0, "rationale": "The passage is irrelevant to the query intent."} | {
"source_dataset": "mteb/scifact",
"task_name": "rerank",
"query_id": "179",
"doc_id": "31387717",
"truncated": false,
"label_space": [
0,
1,
2,
3
],
"output_schema": {
"label": "integer",
"rationale": "string"
}
} |
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