Use Markdown links
@@ -13,9 +13,9 @@ The file format is determined by the extension of the output file (e.g. `.obo`),
- owx - [OWL/XML](https://www.w3.org/TR/owl2-xml-serialization/)
- ttl - [Turtle](https://www.w3.org/TR/turtle/)
-By default, the OBO writer strictly enforces <a href="http://owlcollab.github.io/oboformat/doc/obo-syntax.html#4" target="_blank">document structure rules</a>. If an ontology violates these, the convert to OBO operation will fail. These checks can be ignored by including `--check false`.
+By default, the OBO writer strictly enforces [document structure rules](http://owlcollab.github.io/oboformat/doc/obo-syntax.html#4). If an ontology violates these, the convert to OBO operation will fail. These checks can be ignored by including `--check false`.
-As a document is converted to OBO, you may see `ERROR MASKING ERROR` exceptions. This does not indicate failure, but it should be noted that these axioms will not be translated to OBO format. Rather, they will be included in the ontology header under `owl-axioms`. See <a href="http://owlcollab.github.io/oboformat/doc/obo-syntax.html#5.0.4" target="_blank">Untranslatable OWL axioms</a> for more details.
+As a document is converted to OBO, you may see `ERROR MASKING ERROR` exceptions. This does not indicate failure, but it should be noted that these axioms will not be translated to OBO format. Rather, they will be included in the ontology header under `owl-axioms`. See [Untranslatable OWL axioms](http://owlcollab.github.io/oboformat/doc/obo-syntax.html#5.0.4) for more details.
You can choose to keep these in the file, or remove them with:
```
@@ -32,7 +32,7 @@ grep -v ^owl-axioms
### OBO Structure Error
-If `--check` is true (which, by default, it is), the <a href="http://owlcollab.github.io/oboformat/doc/obo-syntax.html#4" target="_blank">document structure rules</a> are strictly enforced. You may choose to review the exception message by running the command again with `--very-very-verbose`, or run `convert` with the `--check false` option to ignore the errors.
+If `--check` is true (which, by default, it is), the [document structure rules](http://owlcollab.github.io/oboformat/doc/obo-syntax.html#4) are strictly enforced. You may choose to review the exception message by running the command again with `--very-very-verbose`, or run `convert` with the `--check false` option to ignore the errors.
Please note that `--check false` may result in some unintended output. For example, for terms with more than one definition annotation, a defintion will be chosen at random.
