hotfix-4.6.x: minor change adapting to new changes in biodata EvidenceEntry.DrugResponseClassification items
@@ -127,8 +127,11 @@ public class VariantAnnotationUtils {
public static final Set<String> CODING_SO_NAMES = new HashSet<>();
public static final Map<String, ClinicalSignificance> CLINVAR_CLINSIG_TO_ACMG = new HashMap<>();
public static final Map<String, TraitAssociation> CLINVAR_CLINSIG_TO_TRAIT_ASSOCIATION = new HashMap<>();
- public static final Map<String, DrugResponseClassification> CLINVAR_CLINSIG_TO_DRUG_RESPONSE = new HashMap<>();
public static final HashMap<String, ConsistencyStatus> CLINVAR_REVIEW_TO_CONSISTENCY_STATUS = new HashMap<>();
+ // Currently left empty since the only item within DrugResponseClassification that seemed to match any clinvar
+ // tag ("responsive") was removed at some point from the model
+ public static final Map<String, DrugResponseClassification> CLINVAR_CLINSIG_TO_DRUG_RESPONSE = new HashMap<>();
+
public static final HashMap<Object, ModeOfInheritance> MODEOFINHERITANCE_MAP = new HashMap<>();
public static final HashMap<String, AlleleOrigin> COSMIC_SOMATICSTATUS_TO_ALLELE_ORIGIN = new HashMap<>();
private static final String ATG = "ATG";
@@ -178,8 +181,6 @@ public class VariantAnnotationUtils {
CLINVAR_CLINSIG_TO_TRAIT_ASSOCIATION.put("risk factor", TraitAssociation.established_risk_allele);
CLINVAR_CLINSIG_TO_TRAIT_ASSOCIATION.put("protective", TraitAssociation.protective);
- CLINVAR_CLINSIG_TO_DRUG_RESPONSE.put("drug response", DrugResponseClassification.responsive);
-
///////////////////////////////////////////////////////////////////////
///// ClinVar and Cosmic allele origins to SO terms ///////////////
///////////////////////////////////////////////////////////////////////
