parse all three conservation score types
@@ -81,10 +81,6 @@ public class ConservationBuilder extends CellBaseBuilder {
logger.debug("GERP data not found: " + gerpFolderPath.toString());
}
- if (conservedRegionPath != null) {
- return;
- }
-
/*
* UCSC phastCons and phylop are stored in the same format. They are processed together.
*/
@@ -161,9 +157,6 @@ public class ConservationBuilder extends CellBaseBuilder {
= new GenomicScoreRegion(chromosome, start, end, "gerp", conservationScores);
fileSerializer.serialize(conservationScoreRegion, getOutputFileName(chromosome));
- // save later
-// conservationScoreRegions.add(conservationScoreRegion);
-
// reset values for next query
start = end + 1;
end += chunkSize;
