lib: add the whole document 'mirna' in the include statement, and the 'mirna' fields (e.g., mirna.matures.id, mirna.matures.cdnaStart,...) are removed, #TASK-1776
@@ -1187,9 +1187,7 @@ public class VariantAnnotationCalculator {
"transcripts.genomicCodingStart", "transcripts.genomicCodingEnd", "transcripts.cdnaCodingStart",
"transcripts.cdnaCodingEnd", "transcripts.exons.start", "transcripts.exons.cdsStart", "transcripts.exons.end",
"transcripts.exons.cdsEnd", "transcripts.exons.sequence", "transcripts.exons.phase",
- "transcripts.exons.exonNumber", "mirna.matures", "mirna.sequence", "mirna.matures.cdnaStart",
- "transcripts.exons.genomicCodingStart", "transcripts.exons.genomicCodingEnd",
- "mirna.matures.cdnaEnd"));
+ "transcripts.exons.exonNumber", "mirna", "transcripts.exons.genomicCodingStart", "transcripts.exons.genomicCodingEnd"));
if (annotatorSet.contains("expression")) {
includeGeneFields.add("annotation.expression");
@@ -1205,7 +1203,6 @@ public class VariantAnnotationCalculator {
}
if (annotatorSet.contains("mirnaTargets")) {
includeGeneFields.add("annotation.targets");
- includeGeneFields.add("mirna.matures.id");
}
if (annotatorSet.contains("cancerGeneAssociation")) {
includeGeneFields.add("annotation.cancerAssociations");
