Changed names of some variables.
@@ -28,7 +28,6 @@ import java.util.logging.Logger;
import dulab.adap.workflow.decomposition.Decomposition;
import net.sf.mzmine.datamodel.*;
import net.sf.mzmine.datamodel.impl.*;
-import net.sf.mzmine.modules.peaklistmethods.peakpicking.adap3decompositionV1_5.ADAP3DecompositionV1_5Parameters;
import net.sf.mzmine.modules.peaklistmethods.qualityparameters.QualityParameters;
import net.sf.mzmine.parameters.ParameterSet;
import net.sf.mzmine.taskcontrol.AbstractTask;
@@ -256,11 +255,11 @@ public class ADAP3DecompositionV2Task extends AbstractTask {
MsDialPeakDetectorParameters.MIN_PEAK_HEIGHT).getValue();
params.durationRange = peakDetectorParameters.getParameter(
MsDialPeakDetectorParameters.PEAK_DURATION).getValue();
- params.minClusterDistance = this.parameters.getParameter(
+ params.prefWindowWidth = this.parameters.getParameter(
ADAP3DecompositionV2Parameters.MIN_CLUSTER_DISTANCE).getValue();
params.minClusterSize = this.parameters.getParameter(
ADAP3DecompositionV2Parameters.MIN_CLUSTER_SIZE).getValue();
- params.similarityTolerance = this.parameters.getParameter(
+ params.retTimeTolerance = this.parameters.getParameter(
ADAP3DecompositionV2Parameters.PEAK_SIMILARITY).getValue();
return decomposition.run(params, peaks);
