Fix command-line properties being ignored.
@@ -130,7 +130,7 @@ public class RepairCommand implements Command {
.map(factory::getOWLAnnotationProperty)
.collect(Collectors.toSet());
- RepairOperation.repair(inputOntology, ioHelper, mergeAxiomAnnotations);
+ RepairOperation.repair(inputOntology, ioHelper, mergeAxiomAnnotations, properties);
outputOntology = inputOntology;
if (outputIRI != null) {
outputOntology.getOWLOntologyManager().setOntologyDocumentIRI(outputOntology, outputIRI);
