update for model change CNVs
@@ -1336,6 +1336,8 @@ public class VariantAnnotationCalculator {
regionList.add(new Region(variant.getChromosome(), variant.getStart(), variant.getStart()));
break;
case CNV:
+ case COPY_NUMBER_GAIN:
+ case COPY_NUMBER:
if (imprecise) {
regionList.add(new Region(variant.getChromosome(), variant.getStart() - cnvExtraPadding,
variant.getStart() + cnvExtraPadding));
