Default disable isotope below noise mass detect
@@ -433,7 +433,9 @@ public class BatchWizardController {
BatchWizardMassSpectrometerParameters.ms1NoiseLevel).getValue()
: msParameters.getParameter(BatchWizardMassSpectrometerParameters.ms2NoiseLevel)
.getValue());
- detectorParam.setParameter(AutoMassDetectorParameters.detectIsotopes, msLevel <= 1);
+ // per default do not detect isotope signals below noise. this might introduce too many signals
+ // for the isotope finder later on and confuse users
+ detectorParam.setParameter(AutoMassDetectorParameters.detectIsotopes, false);
final DetectIsotopesParameter detectIsotopesParameter = detectorParam.getParameter(
AutoMassDetectorParameters.detectIsotopes).getEmbeddedParameters();
detectIsotopesParameter.setParameter(DetectIsotopesParameter.elements,
