Add missing backslashes, see
@@ -66,7 +66,7 @@ Some ontologies contain more axioms than you want to use. You can use the `filte
The reuse of ontology terms creates links between data, making the ontology and the data more valuable. But often you want to reuse just a subset of terms from a target ontology, not the whole thing. Here we take the filtered ontology from the previous step and extract a "STAR" module for the term 'adrenal cortex' and its supporting terms:
- robot extract --method STAR
+ robot extract --method STAR \
--input filtered.owl \
--term-file uberon_module.txt \
--output results/uberon_module.owl
@@ -80,7 +80,7 @@ The `--method` options fall into two groups: Minimal Information for Reuse of Ex
For MIREOT, both "upper" (ancestor) and "lower" (descendant) limits must be specified, like this:
- robot extract --method MIREOT
+ robot extract --method MIREOT \
--input uberon_fragment.owl \
--upper-term "obo:UBERON_0000465" \
--lower-term "obo:UBERON_0001017" \
