feature-improveclinical: minor modification at ClinicalVariantParser.java
@@ -89,7 +89,10 @@ public class ClinicalVariantParser extends CellBaseParser {
clinvarEFOFile, assembly, rdb);
clinvarIndexer.index();
} else {
- logger.warn("One or more of required ClinVar files are missing. Skipping ClinVar data.");
+ logger.warn("One or more of required ClinVar files are missing. Skipping ClinVar data.\n"
+ + "Please, ensure that these two files exist:\n"
+ + "{}\n"
+ + "{}", this.clinvarXMLFile.toString(), this.clinvarSummaryFile.toString());
}
if (this.cosmicFile != null && Files.exists(this.cosmicFile)) {
