lowercase gene sets, to match the other end points
@@ -179,9 +179,9 @@ public class VariantWSServer extends GenericRestWSServer {
allowableValues = "false,true",
defaultValue = "false", required = false) Boolean checkAminoAcidChange,
@QueryParam("consequenceTypeSource")
- @ApiParam(name = "consequenceTypeSource", value = "Gene set, either Ensembl (default) "
- + "or RefSeq", allowableValues = "Ensembl,RefSeq", required = false)
- String consequenceTypeSource) {
+ @ApiParam(name = "consequenceTypeSource", value = "Gene set, either ensembl (default) "
+ + "or refSeq", allowableValues = "ensembl,refseq", defaultValue = "ensembl",
+ required = false) String consequenceTypeSource) {
return getAnnotationByVariant(variants,
normalize,
@@ -257,9 +257,9 @@ public class VariantWSServer extends GenericRestWSServer {
allowableValues = "false,true", defaultValue = "false", required = false)
Boolean checkAminoAcidChange,
@QueryParam("consequenceTypeSource")
- @ApiParam(name = "consequenceTypeSource", value = "Gene set, either Ensembl (default) "
- + "or RefSeq", allowableValues = "Ensembl,RefSeq", allowMultiple = true,
- defaultValue = "Ensembl", required = false) String consequenceTypeSource) {
+ @ApiParam(name = "consequenceTypeSource", value = "Gene set, either ensembl (default) "
+ + "or refseq", allowableValues = "ensembl,refseq", allowMultiple = true,
+ defaultValue = "ensembl", required = false) String consequenceTypeSource) {
return getAnnotationByVariant(variants,
normalize,
skipDecompose,
