Fix minor issues. Set the regularization factor to 0.05
@@ -257,7 +257,8 @@ public class ADAP3DecompositionV2Task extends AbstractTask {
for (int num : file.getScanNumbers())
{
double retTime = file.getScan(num).getRetentionTime();
- if (chromatogram.contains(retTime))
+ Double intensity = chromatogram.getIntensity(retTime, false);
+ if (intensity != null && intensity > 0.0)
scanNumbers[count++] = num;
if (retTime == peak.getRetTime())
representativeScan = num;
