created new "Processing" menu in feature list methods, renamed "identification" to "annotation"
xmlns="http://javafx.com/javafx/8" xmlns:fx="http://javafx.com/fxml/1"
fx:controller="io.github.mzmine.gui.mainwindow.MainMenuController">
-
<Menu text="Project">
<Menu fx:id="recentProjectsMenu" text="Open recent project..."
onShowing="#fillRecentProjects"/>
userData="io.github.mzmine.modules.dataprocessing.group_metacorrelate.export.ExportCorrAnnotationModule"/>
</Menu>
+ <Menu text="Processing">
+ <MenuItem onAction="#runModule" text="Assign MS2 to features"
+ userData="io.github.mzmine.modules.dataprocessing.filter_groupms2.GroupMS2Module"/>
+ <MenuItem onAction="#runModule"
+ text="Calculate CCS values"
+ userData="io.github.mzmine.modules.dataprocessing.id_ccscalc.CCSCalcModule"/>
+ </Menu>
+
+ <Menu text="Isotopes">
+ <MenuItem text="Isotope grouper" onAction="#runModule"
+ userData="io.github.mzmine.modules.dataprocessing.filter_isotopegrouper.IsotopeGrouperModule"/>
+ <MenuItem text="Isotope peak scanner" onAction="#runModule"
+ userData="io.github.mzmine.modules.dataprocessing.id_isotopepeakscanner.IsotopePeakScannerModule"/>
+ </Menu>
<Menu text="Feature grouping">
<MenuItem text="metaCorrelate (corrGroup)" onAction="#runModule"
userData="io.github.mzmine.modules.dataprocessing.id_ion_identity_networking.clearionids.ClearIonIdentitiesModule"/>
</Menu>
- <Menu text="Spectral deconvolution">
+ <Menu text="Spectral deconvolution (GC)">
<MenuItem text="Hierarchical clustering"
onAction="#runModule"
userData="io.github.mzmine.modules.dataprocessing.adap_hierarchicalclustering.ADAPHierarchicalClusteringModule"/>
userData="io.github.mzmine.modules.dataprocessing.adap_mcr.ADAPMultivariateCurveResolutionModule"/>
</Menu>
- <Menu text="Isotopes">
- <MenuItem text="Isotope grouper" onAction="#runModule"
- userData="io.github.mzmine.modules.dataprocessing.filter_isotopegrouper.IsotopeGrouperModule"/>
- <MenuItem text="Isotope peak scanner" onAction="#runModule"
- userData="io.github.mzmine.modules.dataprocessing.id_isotopepeakscanner.IsotopePeakScannerModule"/>
- </Menu>
-
<Menu text="Feature list filtering">
<MenuItem text="Duplicate feature filter"
onAction="#runModule"
userData="io.github.mzmine.modules.dataprocessing.filter_neutralloss.NeutralLossFilterModule"/>
<MenuItem onAction="#runModule" text="mobility-m/z region filter"
userData="io.github.mzmine.modules.dataprocessing.filter_mobilitymzregionextraction.MobilityMzRegionExtractionModule"/>
- <MenuItem onAction="#runModule" text="Assign MS2 to features"
- userData="io.github.mzmine.modules.dataprocessing.filter_groupms2.GroupMS2Module"/>
<MenuItem text="Feature list blank subtraction" onAction="#runModule"
userData="io.github.mzmine.modules.dataprocessing.filter_blanksubtraction.FeatureListBlankSubtractionModule"/>
</Menu>
userData="io.github.mzmine.modules.dataprocessing.norm_standardcompound.StandardCompoundNormalizerModule"/>
</Menu>
- <Menu text="Identification">
- <MenuItem onAction="#runModule"
- text="Calculate CCS values"
- userData="io.github.mzmine.modules.dataprocessing.id_ccscalc.CCSCalcModule"/>
+ <Menu text="Annotation">
<Menu text="Search precursor mass">
<MenuItem text="Local compound database (CSV) search"
onAction="#runModule"
