don't print to the console
@@ -340,10 +340,11 @@ public class GeneParser extends CellBaseParser {
// no strand dependent
transcript.setProteinID(gtf.getAttributes().get("protein_id"));
}
- if (gtf.getFeature().equalsIgnoreCase("start_codon")) {
- // nothing to do
- System.out.println("Empty block, this should be redesigned");
- }
+// if (gtf.getFeature().equalsIgnoreCase("start_codon")) {
+// // nothing to do
+// // this prints out 123,451 times.
+// //System.out.println("Empty block, this should be redesigned");
+// }
if (gtf.getFeature().equalsIgnoreCase("stop_codon")) {
// setCdnaCodingEnd = false; // stop_codon found, cdnaCodingEnd will be set here,
// no need to set it at the beginning of next feature
