Remove extra arg
@@ -170,7 +170,7 @@ public class AnnotateCommand implements Command {
boolean hasAnnotation = false;
boolean removeAnnotations =
- CommandLineHelper.getBooleanValue(line, "remove-annotations", false, true);
+ CommandLineHelper.getBooleanValue(line, "remove-annotations", false);
if (removeAnnotations) {
hasAnnotation = true;
OntologyHelper.removeOntologyAnnotations(ontology);
