Disabled tests that requested external ftp/http resources.
@@ -16,6 +16,7 @@ import htsjdk.tribble.util.TabixUtils;
import htsjdk.variant.bcf2.BCF2Codec;
import htsjdk.variant.variantcontext.VariantContext;
import htsjdk.variant.vcf.VCFCodec;
+import org.junit.Ignore;
import org.junit.Test;
import org.junit.runner.RunWith;
import org.springframework.beans.factory.annotation.Autowired;
@@ -73,6 +74,7 @@ public class TestAbstractFeatureReader {
* Asserts readability and correctness of VCF over HTTP. The VCF is indexed and requires and index.
*/
@Test
+ @Ignore
public void testVcfOverHTTP() throws IOException {
final VCFCodec codec = new VCFCodec();
final AbstractFeatureReader<VariantContext, LineIterator> featureReaderHttp =
@@ -95,6 +97,7 @@ public class TestAbstractFeatureReader {
}
@Test
+ @Ignore
public void testVcfOverHTTPWithQuestionMarks() throws IOException {
final VCFCodec codec = new VCFCodec();
final AbstractFeatureReader<VariantContext, LineIterator> featureReaderHttp =
@@ -104,6 +107,7 @@ public class TestAbstractFeatureReader {
}
@Test
+ @Ignore
public void testLoadBEDFTP() throws Exception {
final String path = "ftp://ftp.broadinstitute.org/distribution/igv/TEST/cpgIslands with spaces.hg18.bed";
final BEDCodec codec = new BEDCodec();
@@ -136,6 +140,7 @@ public class TestAbstractFeatureReader {
}
@Test
+ @Ignore
public void testBlockCompressionExtension() throws URISyntaxException {
String testURIString = "https://www.googleapis.com/download/storage/v1/b/deflaux-public-test/o/NA12877.vcf.gz";
URI testURI = URI.create(testURIString);
