feature-cytoband-annotation: cytoband annotation now included within default annotators
@@ -877,7 +877,8 @@ public class VariantAnnotationCalculator { //extends MongoDBAdaptor implements V
annotatorSet = new HashSet<>(includeList);
} else {
annotatorSet = new HashSet<>(Arrays.asList("variation", "clinical", "conservation", "functionalScore",
- "consequenceType", "expression", "geneDisease", "drugInteraction", "populationFrequencies"));
+ "consequenceType", "expression", "geneDisease", "drugInteraction", "populationFrequencies",
+ "cytoband"));
List<String> excludeList = queryOptions.getAsStringList("exclude");
excludeList.forEach(annotatorSet::remove);
}
